Motif IL_67038.1 Version IL_67038.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_093 | 4IOA | 0.3163 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW | |
| 2 | IL_2QBG_098 | 2QBG | 0.3380 | 1 | B | 23S rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | ||
| 3 | IL_4QCN_096 | 4QCN | 0.2988 | 1 | A | 23S Ribosomal RNA | U | 2534 | G | 2535 | * | C | 2552 | A | 2553 | G | 2555 | ntHS | cWW | cWW | ||
| 4 | IL_1S72_087 | 1S72 | 0.2420 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW | |
| 5 | IL_1VW3_081 | 1VW3 | 0.1906 | 1 | A | 21S ribosomal RNA | U | 2788 | C | 2789 | * | G | 2807 | A | 2808 | G | 2810 | cWW | cWW | |||
| 6 | IL_4A1B_114 | 4A1B | 0.1563 | 1 | 1 | 26S RRNA | U | 2879 | U | 2880 | * | A | 2897 | A | 2898 | G | 2900 | ntHS | cWW | cWW | ||
| 7 | IL_1VX6_117 | 1VX6 | 0.1482 | 1 | A | 28S ribosomal RNA | U | 3250 | U | 3251 | * | A | 3268 | A | 3269 | G | 3271 | ntHS | cWW | cWW | ||
| 8 | IL_4CUV_121 | 4CUV | 0.1356 | 1 | 1 | 25S RRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | cWW | cWW | |||
| 9 | IL_3U5H_117 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | ||
| 10 | IL_1VX6_099 | 1VX6 | 0.6870 | 2 | A | 28S ribosomal RNA | G | 2689 | A | 2691 | * | U | 3340 | A | 3341 | C | 3343 | cWW | cWW | cSH | ||
| 11 | IL_4CUV_100 | 4CUV | 0.7524 | 2 | 1 | 25S RRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH | ||
| 12 | IL_3U5H_097 | 3U5H | 0.7429 | 2 | 5 | 25S rRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH | ||
| 13 | IL_4A1B_094 | 4A1B | 0.7352 | 2 | 1 | 26S RRNA | G | 2391 | A | 2393 | * | U | 2969 | A | 2970 | C | 2972 | cWW | cWW | cSH | ||
| 14 | IL_1VW3_063 | 1VW3 | 0.8352 | 2 | A | 21S ribosomal RNA | A | 1954 | G | 1956 | * | C | 2879 | A | 2881 | U | 2882 | cWW | cWW | |||
| 15 | IL_2QBG_079 | 2QBG | 0.9064 | 2 | B | 23S rRNA | A | 2054 | G | 2056 | * | C | 2612 | A | 2614 | U | 2615 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 4 |
| GAA*UACC | 4 |
| UA*UAAG | 2 |
| ACG*CUAU | 2 |
| UC*GAAG | 1 |
| UU*AACG | 1 |
| UU*AAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 8 |
| A*AC | 4 |
| C*UA | 2 |
| *AC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_67038.1 | Only in the parent motif |
|---|---|---|---|
| IL_46648.8 Compare | IL_1VW3_081, IL_3U5H_117, IL_2QBG_098, IL_1S72_087, IL_4A1B_114, IL_4CUV_121, IL_4IOA_093 | IL_1VX6_117, IL_1VW3_063, IL_4CUV_100, IL_4QCN_096, IL_2QBG_079, IL_1VX6_099, IL_3U5H_097, IL_4A1B_094 | IL_4NVV_095, IL_4CUV_077, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_3WBM_004, IL_4LCK_003, IL_2QWY_005, IL_4A1B_069 |
| IL_87065.3 Compare | IL_2QBG_079, IL_3U5H_097, IL_4A1B_094, IL_1VW3_063, IL_4CUV_100 | IL_1VX6_117, IL_3U5H_117, IL_2QBG_098, IL_4A1B_114, IL_4QCN_096, IL_1VX6_099, IL_1S72_087, IL_1VW3_081, IL_4CUV_121, IL_4IOA_093 |
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Major groove platform with intercalation (H) (2)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.50 | Max 0.97
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