Motif IL_67060.1 Version IL_67060.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_127 | 6CZR | 0.3775 | 0 | C-loop | 1a | SSU rRNA | G | 367 | C | 368 | A | 369 | A | 370 | U | 371 | * | A | 385 | C | 386 | cWW | tWH | cWS | cWW | ||
| 2 | IL_4LFB_015 | 4LFB | 0.4528 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | ntWH | cWS | cWW | ||
| 3 | IL_5J7L_018 | 5J7L | 0.4206 | 0 | C-loop | AA | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW | |
| 4 | IL_5TBW_040 | 5TBW | 0.3291 | 3 | C-loop | 1 | LSU rRNA | G | 999 | C | 1000 | A | 1002 | A | 1003 | U | 1004 | * | A | 1046 | C | 1049 | cWW | tWH | cWS | cWW | ||
| 5 | IL_4WF9_033 | 4WF9 | 0.1235 | 2 | C-loop | X | LSU rRNA | G | 909 | C | 910 | A | 911 | C | 912 | U | 913 | * | A | 954 | C | 957 | tSW | cWW | cSH | tWH | cWS | cWW |
| 6 | IL_7A0S_029 | 7A0S | 0.1406 | 2 | C-loop | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW |
| 7 | IL_7RQB_029 | 7RQB | 0.0000 | 2 | C-loop | 1A | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | tSW | cWW | cSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 3 |
| GCAAU*AC | 2 |
| ACAAU*AU | 1 |
| GCGAAU*AAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 3 |
| CAC*AA | 3 |
| CGAA*AA | 1 |
- Annotations
-
- C-loop (7)
- Basepair signature
- cWW-tWH-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.28 | Max 0.48
Coloring options: