Motif IL_68780.2 Version IL_68780.2 of this group appears in releases 3.20 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10		11		12	1-12	2-11	3-10	4-7	4-9	5-6
1	IL_6DVK_002	6DVK	0.4384	2		H	RNA (95-MER)	C	18	C	19	G	20	A	21	G	22	*	C	68	G	69	U	70	G	73	A	74	C	75	G	76	cWW	ncWB	tSH		tHS	cWW
2	IL_4BW0_001	4BW0	0.0000	1	Kink-turn	A	HMKT-7	G	3	G	4	G	5	A	6	G	7	*	C	16	G	17	A	18	G	20	A	21	A	22	C	23	cWW	tSH	tSH	ntSs	tHS	cWW
3	IL_5FJ4_002	5FJ4	0.1141	1	Kink-turn	H	HMKT-7	G	3	G	4	G	5	A	6	G	7	*	C	26	G	27	A	28	G	30	A	31	A	32	C	33	cWW	tSH	tSH	ntSs	tHS	cWW
4	IL_4CS1_002	4CS1	0.1715	1	Kink-turn	A	5'-(GPGPCPGPAPAPGPAPAPCPCPGPGPGP GPAPGPCP*CP)-3'	G	13	G	14	G	15	A	16	G	17	*	C	3\|\|\|\|9_769	G	4\|\|\|\|9_769	A	5\|\|\|\|9_769	G	7\|\|\|\|9_769	A	8\|\|\|\|9_769	A	9\|\|\|\|9_769	C	10\|\|\|\|9_769	cWW	tSH	tSH	ntSs	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGGAG*CGAAGAAC	3
CCGAG*CGUUUGACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAAGAA	3
CGA*GUUUGAC	1

Release history

Release	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn (3)
(1)
Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
Heat map statistics: Min 0.11 | Avg 0.23 | Max 0.52

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Coloring options: Nucleotide numbers

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