Motif IL_69145.2 Version IL_69145.2 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-7	2-6	4-5
1	IL_4KQY_006	4KQY	0.2223	3	Pseudoknot	A	SAM-I riboswitch	G	106	G	107	A	108	A	109	*	U	85	G	89	C	90	cWW		cWW
2	IL_4AOB_004	4AOB	0.0000	3	Pseudoknot	A	SAM-I riboswitch	G	82	A	83	A	84	A	85	*	U	64	G	68	C	69	cWW		cWW
3	IL_5FJC_004	5FJC	0.1278	3	Pseudoknot	A	SAM-I riboswitch	G	82	A	83	A	84	A	85	*	U	64	G	68	C	69	cWW		cWW
4	IL_3V7E_005	3V7E	0.2618	3		C	SAM-I riboswitch	G	114	A	115	A	116	A	117	*	U	96	G	100	C	101	cWW		cWW
5	IL_3PDR_002	3PDR	0.8034	1		X	M-box riboswitch (ykoK leader)	U	159	C	160	U	161	A	162	*	U	23	A	25	G	26	cWW	tSH	cWW
6	IL_4PDQ_003	4PDQ	0.9301	0		A+B	RNA (23-mer)	G	16	A	17	A	18	G	19	*	C	30	A	31	C	32	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAA*UCCUGC	3
GGAA*UCCAGC	1
UCUA*UUAG	1
GAAG*CAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*CCUG	3
GA*CCAG	1
CU*UA	1
AA*A	1

Release history

Release	3.88
Date	2024-09-11
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Pseudoknot (3)
Basepair signature: cWW-L-R-L-cWW
Heat map statistics: Min 0.13 | Avg 0.49 | Max 0.97

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