#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-64-5
1 IL_4KQY_0064KQY0.22233PseudoknotA SAM-I riboswitchG106G107A108A109*U85G89C90cWWcWW
2 IL_4AOB_0044AOB0.00003PseudoknotA SAM-I riboswitchG82A83A84A85*U64G68C69cWWcWW
3 IL_5FJC_0045FJC0.12783PseudoknotA SAM-I riboswitchG82A83A84A85*U64G68C69cWWcWW
4 IL_3V7E_0053V7E0.26183C SAM-I riboswitchG114A115A116A117*U96G100C101cWWcWW
5 IL_3PDR_0023PDR0.80341XM-box riboswitch (ykoK leader)U159C160U161A162*U23A25G26cWWtSHcWW
6 IL_4PDQ_0034PDQ0.93010A+BRNA (23-mer)G16A17A18G19*C30A31C32cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAA*UCCUGC3
GGAA*UCCAGC1
UCUA*UUAG1
GAAG*CAC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*CCUG3
GA*CCAG1
CU*UA1
AA*A1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Pseudoknot (3)
  • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.13 | Avg 0.49 | Max 0.97
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