Motif IL_69145.2 Version IL_69145.2 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KQY_006 | 4KQY | 0.2223 | 3 | Pseudoknot | A | G | 106 | G | 107 | A | 108 | A | 109 | * | U | 85 | G | 89 | C | 90 | cWW | cWW | |
| 2 | IL_4AOB_004 | 4AOB | 0.0000 | 3 | Pseudoknot | A | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | G | 68 | C | 69 | cWW | cWW | |
| 3 | IL_5FJC_004 | 5FJC | 0.1278 | 3 | Pseudoknot | A | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | G | 68 | C | 69 | cWW | cWW | |
| 4 | IL_3V7E_005 | 3V7E | 0.2618 | 3 | C | G | 114 | A | 115 | A | 116 | A | 117 | * | U | 96 | G | 100 | C | 101 | cWW | cWW | ||
| 5 | IL_3PDR_002 | 3PDR | 0.8034 | 1 | X | U | 159 | C | 160 | U | 161 | A | 162 | * | U | 23 | A | 25 | G | 26 | cWW | tSH | cWW | |
| 6 | IL_4PDQ_003 | 4PDQ | 0.9301 | 0 | A+B | G | 16 | A | 17 | A | 18 | G | 19 | * | C | 30 | A | 31 | C | 32 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UCCUGC | 3 |
| GGAA*UCCAGC | 1 |
| UCUA*UUAG | 1 |
| GAAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CCUG | 3 |
| GA*CCAG | 1 |
| CU*UA | 1 |
| AA*A | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.49 | Max 0.97
Coloring options: