Motif IL_69496.1 Version IL_69496.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1M5K_001 | 1M5K | 0.1523 | 1 | B+A | RNA HAIRPIN RIBOZYME | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | * | C | 11 | A2M | 12 | U | 14 | C | 15 | C | 16 | cWW | cWWa | tSH | ntHS | cWW |
| 2 | IL_3BBM_001 | 3BBM | 0.0000 | 0 | B+A | Loop A and Loop B Ribozyme strand | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | * | C | 4 | A2M | 5 | U | 7 | C | 8 | C | 9 | cWW | cWWa | tSH | ntHS | cWW |
| 3 | IL_3GS5_001 | 3GS5 | 0.1103 | 1 | A | RNA (25-MER) | G | 18 | A | 19 | G | 20||A | A | 21 | A | 22 | G | 23 | * | C | 4 | A | 5 | U | 7 | C | 8 | C | 9 | cWW | cWWa | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAG*C(A2M)GUCC | 1 |
| GAGAAG*CGUCC | 1 |
| GAGAAG*CAGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*(A2M)GUC | 1 |
| AGAA*GUC | 1 |
| AGAA*AGUC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Heat map statistics
- Min 0.11 | Avg 0.10 | Max 0.19
Coloring options: