Motif IL_69536.5 Version IL_69536.5 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_098 | 4IOA | 0.1692 | 2 | X | LSU rRNA | U | 2666 | C | 2667 | C | 2670 | * | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | cWW | tSH | cWW | ||
| 2 | IL_4QCN_102 | 4QCN | 0.1523 | 2 | A | 23S Ribosomal RNA | U | 2699 | U | 2700 | C | 2703 | * | G | 2731 | G | 2732 | U | 2733 | A | 2734 | G | 2735 | cWW | tSH | cWW | ||
| 3 | IL_2QBG_103 | 2QBG | 0.0000 | 2 | B | 23S rRNA | U | 2687 | G | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW | ||
| 4 | IL_4W21_040 | 4W21 | 0.7574 | 0 | 5 | 28S ribosomal RNA | G | 1051 | G | 1064 | G | 1065 | * | C | 988 | U | 989 | C | 990 | C | 991 | C | 992 | cWW | ncWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUCC*GGUAG | 1 |
| UUUCC*GGUAG | 1 |
| UGUUC*GGUAG | 1 |
| GGG*CUCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUC*GUA | 1 |
| UUC*GUA | 1 |
| GUU*GUA | 1 |
| G*UCC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_69536.5 | Only in the parent motif |
|---|---|---|---|
| IL_69536.4 Compare | IL_4QCN_102, IL_4IOA_098, IL_2QBG_103 | IL_4W21_040 | IL_4CUX_084 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-R-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.35 | Max 0.79
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