Motif IL_69536.4 Version IL_69536.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_084 | 4CUX | 0.9648 | 3 | 2 | 18S RRNA | U | 1752 | A | 1753 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | A | 1648 | cWW | cWW | cWW |
| 2 | IL_4IOA_098 | 4IOA | 0.0000 | 2 | X | LSU rRNA | U | 2666 | C | 2667 | C | 2670 | * | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | cWW | tSH | cWW |
| 3 | IL_4QCN_102 | 4QCN | 0.1580 | 2 | A | 23S Ribosomal RNA | U | 2699 | U | 2700 | C | 2703 | * | G | 2731 | G | 2732 | U | 2733 | A | 2734 | G | 2735 | cWW | tSH | cWW |
| 4 | IL_2QBG_103 | 2QBG | 0.1692 | 2 | B | 23S rRNA | U | 2687 | G | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCUA*UAAAAG | 1 |
| UCUCC*GGUAG | 1 |
| UUUCC*GGUAG | 1 |
| UGUUC*GGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCU*AAAA | 1 |
| CUC*GUA | 1 |
| UUC*GUA | 1 |
| GUU*GUA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_69536.4 | Only in the parent motif |
|---|---|---|---|
| IL_69536.3 Compare | IL_4CUX_084, IL_4IOA_098, IL_2QBG_103 | IL_4QCN_102 | IL_4NVV_101 |
Children motifs
| Child motif | Common motif instances | Only in IL_69536.4 | Only in the child motif |
|---|---|---|---|
| IL_69536.5 Compare | IL_4QCN_102, IL_4IOA_098, IL_2QBG_103 | IL_4CUX_084 | IL_4W21_040 |
| IL_72032.1 Compare | IL_4CUX_084 | IL_4QCN_102, IL_4IOA_098, IL_2QBG_103 | IL_4CUV_104, IL_4W21_054, IL_4W21_027, IL_4W21_043, IL_1J2B_001, IL_1MFQ_001, IL_4W23_015 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-R-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.43 | Max 1.00
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