Motif IL_70237.4 Version IL_70237.4 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_147 | 3U5H | 0.2023 | 0 | 7 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW | |
| 2 | IL_1S72_102 | 1S72 | 0.0935 | 0 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW | |
| 3 | IL_4NVV_110 | 4NVV | 0.0000 | 0 | B | 5S Ribosomal RNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | cSH | cWW | cWS | cWW | tSW | |
| 4 | IL_1MJI_002 | 1MJI | 0.1729 | 0 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ntSW | cWW | cWS | cWW | tSW | |
| 5 | IL_4A1C_007 | 4A1C | 0.1826 | 0 | 3 | 5S RRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | cWW | cWW | tSW | |||
| 6 | IL_2QBG_004 | 2QBG | 0.4225 | 0 | A | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 2 |
| UUCCC*GAUCA | 1 |
| UACCC*GAACA | 1 |
| UUCCC*GAACA | 1 |
| AUCCC*GAACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*AAC | 2 |
| CCC*AAC | 2 |
| UCC*AUC | 1 |
| ACC*AAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70237.4 | Only in the parent motif |
|---|---|---|---|
| IL_70237.3 Compare | IL_1S72_102, IL_4A1C_007, IL_3U5H_147, IL_2QBG_004, IL_1MJI_002 | IL_4NVV_110 | IL_3V2F_110 |
Children motifs
| Child motif | Common motif instances | Only in IL_70237.4 | Only in the child motif |
|---|---|---|---|
| IL_70237.5 Compare | IL_1S72_102, IL_4A1C_007, IL_4NVV_110, IL_1MJI_002, IL_2QBG_004, IL_3U5H_147 | IL_4CUV_154 |
- Annotations
- Basepair signature
- cWW-L-L-cWS-tSW-R-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.22 | Max 0.48
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