Motif IL_70237.3 Version IL_70237.3 of this group appears in releases 0.7 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_004 | 2QBG | 0.4219 | 0 | A | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW | |
| 2 | IL_1MJI_002 | 1MJI | 0.1950 | 0 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ntSW | cWW | cWS | cWW | tSW | |
| 3 | IL_4A1C_007 | 4A1C | 0.1875 | 0 | 3 | 5S RRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | cWW | cWW | tSW | |||
| 4 | IL_1S72_102 | 1S72 | 0.0000 | 0 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW | |
| 5 | IL_3V2F_110 | 3V2F | 0.1168 | 0 | B | 5S Ribosomal RNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW | |
| 6 | IL_3U5H_147 | 3U5H | 0.2012 | 0 | 7 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 2 |
| AUCCC*GAACU | 1 |
| UACCC*GAACA | 1 |
| UUCCC*GAACA | 1 |
| UUCCC*GAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*AAC | 2 |
| UCC*AAC | 2 |
| ACC*AAC | 1 |
| UCC*AUC | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70237.3 | Only in the parent motif |
|---|---|---|---|
| IL_70237.2 Compare | IL_1S72_102, IL_4A1C_007, IL_2QBG_004, IL_1MJI_002 | IL_3V2F_110, IL_3U5H_147 | IL_1MJI_004, IL_3UXR_110 |
| IL_24335.1 Compare | IL_3U5H_147 | IL_1S72_102, IL_4A1C_007, IL_3V2F_110, IL_2QBG_004, IL_1MJI_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_70237.3 | Only in the child motif |
|---|---|---|---|
| IL_70237.4 Compare | IL_1S72_102, IL_4A1C_007, IL_3U5H_147, IL_2QBG_004, IL_1MJI_002 | IL_3V2F_110 | IL_4NVV_110 |
- Annotations
- Basepair signature
- cWW-L-L-cWS-tSW-R-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.23 | Max 0.48
Coloring options: