Motif IL_70280.1 Version IL_70280.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_046 | 2XZM | 0.0000 | 0 | A | SSU rRNA | G | 863 | U | 864 | A | 865 | U | 866 | U | 867 | * | A | 901 | G | 902 | G | 903 | A | 904 | C | 905 | cWW | cWW | ncWW | cWW | |
| 2 | IL_3U5F_003 | 3U5F | 0.8395 | 1 | 6 | SSU rRNA | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | * | U | 466 | G | 467 | C | 469 | A | 470 | A | 471 | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUU*AGGAC | 1 |
| UCAAA*UGACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*GGA | 1 |
| CAA*GACA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70280.1 | Only in the parent motif |
|---|---|---|---|
| IL_74594.1 Compare | IL_2XZM_046 | IL_3U5F_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_70280.1 | Only in the child motif |
|---|---|---|---|
| IL_97509.1 Compare | IL_3U5F_003 | IL_2XZM_046 | IL_4BPP_046 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-L-R-R-L-cWW
- Heat map statistics
- Min 0.84 | Avg 0.42 | Max 0.84
Coloring options: