Motif IL_71474.1 Version IL_71474.1 of this group appears in releases 3.20 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_413D_001 | 413D | 0.0000 | 1 | Tandem non-canonical cWW pairs | A | RNA (13-mer) | U | 6 | U | 7 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | |
| 2 | IL_5TBW_105 | 5TBW | 0.9711 | 1 | Major groove minor groove platform with extra cWW | 1 | LSU rRNA | G | 2828 | U | 2829 | G | 2830 | * | U | 2858 | U | 2859 | U | 2861 | U | 2862 | cWW | cwW | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 1 |
| GUG*UUUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 1 |
| U*UUU | 1 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (1)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: