Motif IL_71841.1 Version IL_71841.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 3-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5LR4_002 | 5LR4 | 0.3746 | 0 | B+A | RNA (10-mer) | C | 3 | G | 4 | G | 5 | 6MZ | 6 | U | 7 | G | 8 | * | C | 3 | G | 4 | G | 5 | 6MZ | 6 | U | 7 | G | 8 | cWW | tSH | tHS | cWW | |||||
| 2 | IL_3FTF_001 | 3FTF | 0.0000 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | tHS | cWW | ||
| 3 | IL_3FTE_001 | 3FTE | 0.1692 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntHS | tHS | cWW | |||
| 4 | IL_8EPK_004 | 8EPK | 0.5657 | 3 | F | RNA (31-MER) | CFZ | 21 | OMU | 22 | G | 23 | OMC | 24 | CFZ | 25 | UFT | 26 | * | A2M | 5 | CFZ | 6 | UFT | 7 | A2M | 8 | A2M | 10 | OMG | 13 | cWW | tWH | ntSH | ntWS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAAC*GGGAAC | 2 |
| CGG(6MZ)UG*CGG(6MZ)UG | 1 |
| (CFZ)(OMU)G(OMC)(CFZ)(UFT)*(A2M)(CFZ)(UFT)(A2M)(UFT)(A2M)(CFZ)(CFZ)(OMG) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GGAA | 2 |
| GG(6MZ)U*GG(6MZ)U | 1 |
| (OMU)G(OMC)(CFZ)*(CFZ)(UFT)(A2M)(UFT)(A2M)(CFZ)(CFZ) | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Quadruple sheared (2)
- (2)
- Basepair signature
- cWW-tSH-L-R-L-R-tHS-cWW
- Heat map statistics
- Min 0.17 | Avg 0.34 | Max 0.60
Coloring options: