#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5E81_4015E810.383703L tRNAC67G68A69*U4C5G6cWWcWScWW
2 IL_5J7L_2865J7L0.10031Isolated cWS basepairDA LSU rRNAC1196G1197U1198*A1247U1249G1250cWWcWScWW
3 IL_4WF9_0444WF90.00001Isolated cWS basepairX LSU rRNAC1235G1236U1237*A1285U1287G1288cWWcWScWW
4 IL_8VTW_0448VTW0.08261Isolated cWS basepair (H)1A LSU rRNAC1196G1197U1198*A1247U1249G1250cWWcWScWW
5 IL_7A0S_0417A0S0.12691Isolated cWS basepairX LSU rRNAC1210G1211U1212*A1260U1262G1263cWWcWScWW
6 IL_5TBW_0575TBW0.18291Isolated cWS basepair1 LSU rRNAC1376G1377U1378*A1428U1430G1431cWWcWScWW
7 IL_8C3A_0618C3A0.18731Isolated cWS basepair (H)1 LSU rRNAC1372G1373U1374*A1424U1426G1427cWWcWScWW
8 IL_4V9F_0464V9F0.16621Isolated cWS basepair0 LSU rRNAC1301G1302C1303*G1351C1353G1354cWWcWScWW
9 IL_8D29_0078D290.45233JRNA (34-MER)C9A10G11*C21U25G26ncWWncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGU*AGUG6
CGA*UCG1
CGC*GACG1
CAG*CCCUUG1
Non-Watson-Crick part of the motif
SequenceCounts
G*GU6
G*C1
G*AC1
A*CCUU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWS basepair (5)
  • (2)
  • Isolated cWS basepair (H) (2)
  • Basepair signature
    cWW-cWS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.25 | Max 0.67
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 2.3567 s