Motif IL_74605.1 Version IL_74605.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NPB_007 | 3NPB | 0.0000 | 2 | A | TL5 RNA | U | 85 | A | 88 | G | 89 | C | 90 | * | G | 106 | G | 107 | A | 108 | A | 109 | cWW | cWW |
| 2 | IL_3O58_002 | 3O58 | 0.2291 | 1 | 1+3 | 25S ribosomal RNA + 5.8S ribosomal RNA | A | 12 | A | 13 | C | 15 | A | 16 | * | U | 143 | G | 144 | U | 145 | U | 146 | cWW | ncWW |
| 3 | IL_2GIS_004 | 2GIS | 0.9474 | 2 | A | SAM-I riboswitch | U | 64 | U | 67 | G | 68 | C | 69 | * | G | 82 | A | 83 | A | 84 | A | 85 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCAGC*GGAA | 1 |
| AAUCA*UGUU | 1 |
| UCCUGC*GAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCAG*GA | 1 |
| AUC*GU | 1 |
| CCUG*AA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_74605.1 | Only in the parent motif |
|---|---|---|---|
| IL_87816.1 Compare | IL_2GIS_004 | IL_3NPB_007, IL_3O58_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_74605.1 | Only in the child motif |
|---|---|---|---|
| IL_76831.1 Compare | IL_3NPB_007 | IL_2GIS_004, IL_3O58_002 | IL_1DUQ_001, IL_1CSL_001, IL_1QBP_008, IL_1DUQ_003, IL_1DUQ_005, IL_1DUQ_007, IL_3GX5_004 |
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