Motif IL_75255.1 Version IL_75255.1 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_449 | 8C3A | 0.3983 | 2 | C-loop | CM | SSU rRNA | U | 1604 | C | 1605 | C | 1606 | C | 1607 | U | 1608 | * | A | 1142 | A | 1145 | cSH | cWW | ncSH | tWH | cWS | cWW | |
| 2 | IL_1KOG_007 | 1KOG | 0.3551 | 1 | C-loop | O | Threonyl-tRNA synthetase mRNA | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | * | A | 74 | G | 76 | ncSH | cSH | tWH | cWS | cWW | ||
| 3 | IL_6XJQ_001 | 6XJQ | 0.3617 | 1 | C-loop | A | Self-alkylating ribozyme (58-MER) | G | 5 | C | 6 | U | 7 | C | 8 | C | 9 | * | G | 52 | C | 54 | ncSH | cWW | cSH | tWH | ncWS | cWW | |
| 4 | IL_4MGN_001 | 4MGN | 0.2951 | 1 | C-loop | A | glyQS T box riboswitch | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | ncSH | ntWH | ntHS | cWS | cWW | |
| 5 | IL_6CZR_127 | 6CZR | 0.0000 | 0 | C-loop | 1a | SSU rRNA | G | 367 | C | 368 | A | 369 | A | 370 | U | 371 | * | A | 385 | C | 386 | cWW | tWH | cWS | cWW | |||
| 6 | IL_8C3A_416 | 8C3A | 0.1790 | 0 | C-loop | CM | SSU rRNA | C | 441 | C | 442 | A | 443 | A | 444 | U | 445 | * | A | 458 | G | 459 | cSH | cWW | cWS | ||||
| 7 | IL_5J7L_018 | 5J7L | 0.1812 | 0 | C-loop | AA | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW | ||
| 8 | IL_4LFB_015 | 4LFB | 0.1858 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAU*AC | 2 |
| UCCCU*ACCA | 1 |
| CCACU*AUG | 1 |
| GCUCC*GUC | 1 |
| CCUCU*ACG | 1 |
| CCAAU*AG | 1 |
| ACAAU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 4 |
| CCC*CC | 1 |
| CAC*U | 1 |
| CUC*U | 1 |
| CUC*C | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop (8)
- Basepair signature
- cWW-cSH-cWS-cSH-tWH-cWW
- Heat map statistics
- Min 0.13 | Avg 0.27 | Max 0.47
Coloring options: