Motif IL_75461.1 Version IL_75461.1 of this group appears in releases 3.2 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7	1-3	1-7	3-4	4-6
1	IL_4LFB_052	4LFB	0.9395	3	180 degree turn	A	SSU rRNA	G	1255	A	1256	G	1258	*	C	1277	U	1278	A	1279	C	1282	ncSs	cWW	cWW
2	IL_5J7L_055	5J7L	0.0000	3	180 degree turn	AA	SSU rRNA	G	1255	A	1256	G	1258	*	C	1277	G	1278	G	1279	C	1282	cSs	cWW	cWW
3	IL_4V88_460	4V88	0.6928	6	180 degree turn	A6	SSU rRNA	G	1488	U	1489	C	1494	*	G	1513	U	1514	A	1515	C	1518		cWW	cWW	cSs

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUG*CUAAUC	1
GAAG*CGGACC	1
GUCUAAC*GUAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AU*UAAU	1
AA*GGAC	1
UCUAA*UAAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 180 degree turn (3)
Basepair signature: cWW-tSS-cSS-L-R-cWW
Heat map statistics: Min 0.69 | Avg 0.59 | Max 1.02

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Coloring options: Nucleotide numbers

Motif IL_75461.1 Version IL_75461.1 of this group appears in releases 3.2 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_75461.1 Version IL_75461.1 of this group appears in releases 3.2 to 3.17

Download

Csv

Json