Motif IL_77263.3 Version IL_77263.3 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4TZZ_006 | 4TZZ | 0.1781 | 1 | F | T-box leader | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | * | C | 94 | G | 95 | A | 96 | G | 97 | ncWW | tsS | tSH | tHS | cWW | |
| 2 | IL_4TZZ_002 | 4TZZ | 0.2081 | 1 | C | T-box leader | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | * | C | 94 | G | 95 | A | 96 | G | 97 | cWW | tsS | ntSH | tHS | cWW | |
| 3 | IL_1E7K_002 | 1E7K | 0.1924 | 1 | D | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW | |
| 4 | IL_2OZB_002 | 2OZB | 0.1314 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | tsS | tSH | tHS | cWW |
| 5 | IL_3SIU_001 | 3SIU | 0.0000 | 1 | C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW | |
| 6 | IL_3SIV_003 | 3SIV | 0.1698 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | ncWW |
| 7 | IL_3SIV_001 | 3SIV | 0.1795 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAG*UGAG | 3 |
| CGAUGAG*CGAG | 2 |
| CAAUGAG*CGAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGA*GA | 5 |
| GAUGA*GA | 2 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77263.3 | Only in the parent motif |
|---|---|---|---|
| IL_77263.2 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_1E7K_002, IL_3SIV_001 | IL_4TZZ_006, IL_4TZZ_002 | IL_4LCK_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn from U4 (3)
- Basepair signature
- cWW-tSS-L-tSH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.17 | Max 0.25
Coloring options: