Motif IL_77263.2 Version IL_77263.2 of this group appears in releases 1.5 to 1.17
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1E7K_002 | 1E7K | 0.1924 | 1 | D | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW | |
2 | IL_2OZB_002 | 2OZB | 0.1314 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | tsS | tSH | tHS | cWW |
3 | IL_3SIU_001 | 3SIU | 0.0000 | 1 | C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW | |
4 | IL_3SIV_003 | 3SIV | 0.1698 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | ncWW |
5 | IL_3SIV_001 | 3SIV | 0.1795 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
6 | IL_4LCK_001 | 4LCK | 0.2240 | 1 | C | T-BOX RIBOSWITCH STEM I | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | * | C | 94 | G | 95 | A | 96 | G | 97 | cWW | tsS | ntSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAUGAG*UGAG | 3 |
CAAUGAG*CGAG | 2 |
CGAUGAG*CGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAUGA*GA | 5 |
GAUGA*GA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_77263.2 | Only in the parent motif |
---|---|---|---|
IL_77263.1 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_3SIV_001, IL_1E7K_002 | IL_4LCK_001 |
Children motifs
Child motif | Common motif instances | Only in IL_77263.2 | Only in the child motif |
---|---|---|---|
IL_77263.3 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_1E7K_002, IL_3SIV_001 | IL_4LCK_001 | IL_4TZZ_006, IL_4TZZ_002 |
- Annotations
-
- (3)
- Kink-turn from U4 (3)
- Basepair signature
- cWW-tSS-L-tSH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.17 | Max 0.28
Coloring options: