#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 101-102-94-95-86-7
1 IL_1E7K_0021E7K0.19241DRNA (22-mer)C28A29A30G32A33G34*C42G43A44G45cWWntsStSHtHScWW
2 IL_2OZB_0022OZB0.13141Kink-turn from U4CRNA comprising the 5' Stem-Loop RNA of U4snRNAC28A29A30G32A33G34*C42G43A44G45cWWtsStSHtHScWW
3 IL_3SIU_0013SIU0.00001CU4atac snRNAC33A34A35G37A38G39*U47G48A49G50cWWntsStSHtHScWW
4 IL_3SIV_0033SIV0.16981Kink-turn from U4F+CU4atac snRNAC33A34A35G37A38G39*U47G48A49G50cWWntsStSHtHSncWW
5 IL_3SIV_0013SIV0.17951Kink-turn from U4C+FU4atac snRNAC33A34A35G37A38G39*U47G48A49G50cWWntsStSHtHScWW
6 IL_4LCK_0014LCK0.22401CT-BOX RIBOSWITCH STEM IC6G7A8G10A11G12*C94G95A96G97cWWtsSntSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAUGAG*UGAG3
CAAUGAG*CGAG2
CGAUGAG*CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
AAUGA*GA5
GAUGA*GA1

Release history

Release1.51.61.71.81.91.101.111.121.131.141.151.17
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-202014-09-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_77263.2Only in the parent motif
IL_77263.1
Compare
IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_3SIV_001, IL_1E7K_002IL_4LCK_001

Children motifs

Child motifCommon motif instancesOnly in IL_77263.2Only in the child motif
IL_77263.3
Compare
IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_1E7K_002, IL_3SIV_001IL_4LCK_001IL_4TZZ_006, IL_4TZZ_002
Annotations
  • (3)
  • Kink-turn from U4 (3)
  • Basepair signature
    cWW-tSS-L-tSH-tHS-cWW
    Heat map statistics
    Min 0.11 | Avg 0.17 | Max 0.28
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