Motif IL_77691.3 Version IL_77691.3 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6D3P_003 | 6D3P | 0.9476 | 0 | A | RNA (45-MER) | G | 32 | G | 33 | A | 34 | A | 35 | A | 36 | * | U | 6 | A | 7 | A | 8 | C | 9 | cWW | tSH | cWW | ||
| 2 | IL_3IGI_009 | 3IGI | 0.3569 | 0 | UAA/GAN related | A | Group IIC intron | C | 190 | A | 191 | A | 192 | A | 193 | G | 194 | * | U | 172 | G | 173 | A | 174 | G | 175 | cWW | tSH | tHS | cWW |
| 3 | IL_1GID_010 | 1GID | 0.2285 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | cWW | |
| 4 | IL_2R8S_002 | 2R8S | 0.2087 | 0 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | cWW |
| 5 | IL_3FS0_001 | 3FS0 | 0.1697 | 0 | UAA/GAN related | B+A | RNA (11-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | tSH | ntHh | cWW |
| 6 | IL_5J7L_317 | 5J7L | 0.0000 | 0 | UAA/GAN variation | DA | LSU rRNA | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | * | U | 1864 | U | 1865 | A | 1866 | G | 1867 | cWW | tSH | cWW | |
| 7 | IL_4WF9_075 | 4WF9 | 0.1438 | 0 | UAA/GAN | X | LSU rRNA | C | 1901 | G | 1902 | A | 1903 | A | 1904 | G | 1905 | * | U | 1891 | U | 1892 | A | 1893 | G | 1894 | cWW | ntSH | ntHW | cWW |
| 8 | IL_3FTM_002 | 3FTM | 0.2777 | 0 | UAA/GAN variation | D+C | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAG*UAAC | 2 |
| CGGAA*UGAG | 2 |
| CGAAG*UUAG | 2 |
| GGAAA*UAAC | 1 |
| CAAAG*UGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AA | 2 |
| GGA*GA | 2 |
| GAA*UA | 2 |
| GAA*AA | 1 |
| AAA*GA | 1 |
- Annotations
-
- UAA/GAN variation (3)
- (2)
- UAA/GAN related (2)
- UAA/GAN (1)
- Basepair signature
- cWW-tSH-tHS-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.39 | Max 1.00
Coloring options: