Motif IL_79083.1 Version IL_79083.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_139 | 3U5H | 0.6509 | 0 | 5 | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | G | 3369 | A | 3370 | G | 3371 | cWW | ntSH | tHH | cWW | |
| 2 | IL_2ZJR_102 | 2ZJR | 0.7007 | 0 | tHS double platform (H) | X | LSU rRNA | U | 2822 | G | 2823 | C | 2824 | A | 2825 | C | 2826 | G | 2827 | * | U | 2840 | U | 2841 | C | 2842 | A | 2843 | G | 2844 | cWW | ntSH | tHH | cWW |
| 3 | IL_4A1B_130 | 4A1B | 0.6097 | 0 | 1 | LSU rRNA | U | 3290 | G | 3291 | U | 3292 | A | 3293 | A | 3294 | G | 3295 | * | C | 3323 | U | 3324 | G | 3325 | A | 3326 | G | 3327 | cWW | ntSH | ntHH | cWW | |
| 4 | IL_2QBG_109 | 2QBG | 0.4763 | 0 | B | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | |
| 5 | IL_3UXR_106 | 3UXR | 0.0000 | 0 | A | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*CUGAG | 2 |
| UGUAAG*UUGAG | 2 |
| UGCACG*UUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 4 |
| GCAC*UCA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79083.1 | Only in the parent motif |
|---|---|---|---|
| IL_82794.1 Compare | IL_2ZJR_102, IL_2QBG_109 | IL_4A1B_130, IL_3UXR_106, IL_3U5H_139 |
Children motifs
| Child motif | Common motif instances | Only in IL_79083.1 | Only in the child motif |
|---|---|---|---|
| IL_79083.2 Compare | IL_4A1B_130, IL_2ZJR_102, IL_2QBG_109, IL_3U5H_139 | IL_3UXR_106 | IL_3V2F_106 |
- Annotations
-
- (4)
- tHS double platform (H) (1)
- Basepair signature
- 11_cWW-tSH---tHH-cWW
- Heat map statistics
- Min 0.19 | Avg 0.35 | Max 0.70
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