Motif IL_79083.2 Version IL_79083.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_106 | 3V2F | 0.6160 | 0 | A | 23S Ribosomal RNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | cWW | ||
| 2 | IL_2QBG_109 | 2QBG | 0.3329 | 0 | B | 23S rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | |
| 3 | IL_3U5H_139 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | G | 3369 | A | 3370 | G | 3371 | cWW | ntSH | tHH | cWW | |
| 4 | IL_4A1B_130 | 4A1B | 0.2670 | 0 | 1 | 26S RRNA | U | 3290 | G | 3291 | U | 3292 | A | 3293 | A | 3294 | G | 3295 | * | C | 3323 | U | 3324 | G | 3325 | A | 3326 | G | 3327 | cWW | ntSH | ntHH | cWW | |
| 5 | IL_2ZJR_102 | 2ZJR | 0.3455 | 0 | X | LSU rRNA | U | 2822 | G | 2823 | C | 2824 | A | 2825 | C | 2826 | G | 2827 | * | U | 2840 | U | 2841 | C | 2842 | A | 2843 | G | 2844 | cWW | ntSH | tHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*UUGAG | 2 |
| UGUAAG*CUGAG | 2 |
| UGCACG*UUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 4 |
| GCAC*UCA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79083.2 | Only in the parent motif |
|---|---|---|---|
| IL_79083.1 Compare | IL_4A1B_130, IL_2ZJR_102, IL_2QBG_109, IL_3U5H_139 | IL_3V2F_106 | IL_3UXR_106 |
Children motifs
| Child motif | Common motif instances | Only in IL_79083.2 | Only in the child motif |
|---|---|---|---|
| IL_79083.3 Compare | IL_4A1B_130, IL_3V2F_106, IL_2QBG_109, IL_3U5H_139 | IL_2ZJR_102 | IL_4IOA_103 |
- Annotations
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Heat map statistics
- Min 0.19 | Avg 0.35 | Max 0.71
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