Motif IL_79393.2 Version IL_79393.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 3-5 | 3-9 | 4-10 | 5-10 | 6-9 | 6-10 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_074 | 5TBW | 0.1399 | 0 | 1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW | |||||
| 2 | IL_4V8P_236 | 4V8P | 0.0000 | 0 | D1 | LSU rRNA | A | 1907 | A | 1908 | C | 1909 | A | 1910 | A | 1911 | U | 1912 | G | 1913 | * | C | 2341 | U | 2342 | A | 2343 | U | 2344 | cWW | tHS | cWW | |||||
| 3 | IL_3NDB_002 | 3NDB | 0.4131 | 0 | M | SRP RNA | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | |||||
| 4 | IL_4LFB_048 | 4LFB | 0.7060 | 1 | A | SSU rRNA | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1126 | G | 1127 | C | 1128 | cWW | ncSH | ncWW | ntHS | ncWS | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 1 |
| AACAAUG*CUAU | 1 |
| GGGGUGC*GUCC | 1 |
| GGCACUC*GUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 1 |
| ACAAU*UA | 1 |
| GGGUG*UC | 1 |
| GCACU*UUG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-L-L-tHS-cWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.39 | Max 0.71
Coloring options: