Motif IL_79393.3 Version IL_79393.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 3-5 | 3-9 | 4-10 | 5-10 | 6-9 | 6-10 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_074 | 5TBW | 0.4556 | 0 | 1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW | |||||
| 2 | IL_3NDB_002 | 3NDB | 0.0000 | 0 | M | SRP RNA | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | |||||
| 3 | IL_4LFB_048 | 4LFB | 0.6889 | 1 | A | SSU rRNA | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1126 | G | 1127 | C | 1128 | cWW | ncSH | ncWW | ntHS | ncWS | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 1 |
| GGGGUGC*GUCC | 1 |
| GGCACUC*GUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 1 |
| GGGUG*UC | 1 |
| GCACU*UUG | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.46 | Avg 0.41 | Max 0.69
Coloring options: