Motif IL_79393.5 Version IL_79393.5 of this group appears in releases 3.19 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-7 | 2-10 | 3-8 | 3-9 | 3-10 | 4-5 | 7-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_048 | 4LFB | 0.6889 | 1 | A | SSU rRNA | G | 1124 | U | 1126 | G | 1127 | C | 1128 | * | G | 1143 | G | 1144 | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | cWW | ncWW | ncwW | ntSH | ncSW | cWW | ncSH | |
| 2 | IL_3NDB_002 | 3NDB | 0.0000 | 0 | M | SRP RNA | G | 128 | U | 129 | C | 130 | C | 131 | * | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | cWW | ncSW | cWW | |||||
| 3 | IL_5TBW_074 | 5TBW | 0.4556 | 0 | 1 | LSU rRNA | C | 2346 | U | 2347 | A | 2348 | U | 2349 | * | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGC*GGCACUC | 1 |
| GUCC*GGGGUGC | 1 |
| CUAU*AAUAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUG*GCACU | 1 |
| UC*GGGUG | 1 |
| UA*AUAAU | 1 |
Release history
| Release | 3.19 |
|---|---|
| Date | 2019-05-31 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.46 | Avg 0.41 | Max 0.69
Coloring options: