Motif IL_79393.6 Version IL_79393.6 of this group appears in releases 3.20 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 4-9 | 5-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_074 | 5TBW | 0.4721 | 1 | 1 | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW | ||
| 2 | IL_3NDB_002 | 3NDB | 0.0000 | 1 | M | SRP RNA | G | 247 | G | 248 | G | 249 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | ||
| 3 | IL_3CUL_001 | 3CUL | 0.5229 | 0 | C | RNA (92-MER) | U | 44 | A | 45 | U | 46 | U | 47 | G | 48 | G | 49 | * | C | 22 | A | 23 | G | 24 | G | 25 | cWW | cBW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 1 |
| GGGGUGC*GUCC | 1 |
| UAUUGG*CAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 1 |
| GGGUG*UC | 1 |
| AUUG*AG | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-L-cWW-cWW
- Heat map statistics
- Min 0.47 | Avg 0.37 | Max 0.66
Coloring options: