Motif IL_79636.1 Version IL_79636.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 4-5 | 4-9 | 8-9 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_006 | 1VWW | 0.0000 | 4 | 5 | 28S ribosomal RNA | C | 117 | C | 118 | A | 120 | U | 122 | * | A | 147 | C | 148 | A | 149 | G | 151 | U | 152 | G | 153 | G | 154 | ncWW | cWW | ncSH | ncWH | ||
| 2 | IL_4FAW_006 | 4FAW | 0.8222 | 2 | A | Group II catalytic intron D1-D4-3 | U | 221 | A | 222 | A | 224 | U | 225 | * | A | 149 | U | 150 | A | 151 | G | 153 | A | 154 | G | 155 | G | 156 | cWW | tWH | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCCCGC*GCGCGGGA | 1 |
| UAAAU*AUAUGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCCG*CGCGGG | 1 |
| AAA*UAUGAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79636.1 | Only in the parent motif |
|---|---|---|---|
| IL_60649.1 Compare | IL_4FAW_006 | IL_1VWW_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_79636.1 | Only in the child motif |
|---|---|---|---|
| IL_91857.1 Compare | IL_4FAW_006 | IL_1VWW_006 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.82 | Avg 0.41 | Max 0.82
Coloring options: