Motif IL_80093.1 Version IL_80093.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_074 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | U | 1718 | U | 1719 | A | 1720 | A | 1721 | C | 1722 | * | G | 1772 | G | 1773 | C | 1774 | A | 1775 | A | 1777 | cWW | tHH | tHS | cWW | ||
| 2 | IL_1S72_056 | 1S72 | 0.4835 | 1 | 0 | LSU rRNA | C | 1570 | G | 1571 | A | 1572 | A | 1573 | C | 1574 | * | G | 1622 | C | 1623 | A | 1624 | A | 1626 | G | 1627 | cWW | tSH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAC*GGCAGA | 1 |
| CGAAC*GCAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GCAG | 1 |
| GAA*CAUA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80093.1 | Only in the parent motif |
|---|---|---|---|
| IL_89238.1 Compare | IL_1S72_056 | IL_4A1B_074 |
Children motifs
| Child motif | Common motif instances | Only in IL_80093.1 | Only in the child motif |
|---|---|---|---|
| IL_94519.1 Compare | IL_4A1B_074 | IL_1S72_056 | IL_3U5H_079, IL_4CUV_078 |
| IL_02257.1 Compare | IL_1S72_056 | IL_4A1B_074 |
- Annotations
- Basepair signature
- cWW-L-R-tHH-tHS-cWW
- Heat map statistics
- Min 0.48 | Avg 0.24 | Max 0.48
Coloring options: