Motif IL_80443.1 Version IL_80443.1 of this group appears in releases 3.3 to 3.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V5O_124 | 4V5O | 0.3852 | 0 | BA | SSU rRNA | G | 863 | U | 864 | A | 865 | U | 866 | U | 867 | * | A | 901 | G | 902 | G | 903 | A | 904 | C | 905 | cWW | cWW | ncWW | cWW | ||||
| 2 | IL_5TBW_121 | 5TBW | 0.3670 | 0 | 1 | LSU rRNA | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | ncWW | ncWW | ncWW | ncWWa | cWW | |||
| 3 | IL_5BTM_001 | 5BTM | 0.0000 | 0 | Triple non-canonical cWW pairs | A | RNA (55-mer) | U | 10 | U | 11 | C | 12 | U | 13 | A | 14 | * | U | 42 | U | 43 | C | 44 | U | 45 | A | 46 | cWW | ncWW | cwW | ncWw | cwW | cWW | |
| 4 | IL_4V88_422 | 4V88 | 0.3332 | 0 | A6 | SSU rRNA | C | 708 | C | 709 | U | 710 | U | 711 | G | 712 | * | C | 726 | U | 727 | U | 728 | G | 729 | G | 730 | cWW | ncWW | cwW | cWw | cWW | |||
| 5 | IL_5XTM_006 | 5XTM | 0.7419 | 2 | D | RNA (47-MER) | G | 8 | A | 9 | U | 10 | A | 13 | A | 14 | * | U | 35 | A | 36 | A | 37 | C | 38 | C | 39 | cWW | ncWWa | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUU*AGGAC | 1 |
| CACAC*GCGUG | 1 |
| UUCUA*UUCUA | 1 |
| CCUUG*CUUGG | 1 |
| GAUGAAA*UAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*GGA | 1 |
| ACA*CGU | 1 |
| UCU*UCU | 1 |
| CUU*UUG | 1 |
| AUGAA*AAC | 1 |
- Annotations
-
- (4)
- Triple non-canonical cWW pairs (1)
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.33 | Avg 0.43 | Max 0.76
Coloring options: