IL_80663.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4		5	1-4	1-5	2-3	4-5
1	IL_4V8P_269	4V8P	0.6578	0	Major groove platform (H)	D1	LSU rRNA	C	2864	G	2865	*	U	2937	G	2938	G	2939		cWW	cWW
2	IL_5TBW_107	5TBW	0.6767	0	Major groove platform	1	LSU rRNA	C	2876	G	2877	*	U	2949	G	2950	G	2951		cWW	cWW
3	IL_4IOA_090	4IOA	0.6555	0	Major groove platform (H)	X	LSU rRNA	C	2486	G	2487	*	U	2559	G	2560	G	2561		cWW	cWW	chH
4	IL_5J7L_352	5J7L	0.7925	0	Major groove intercalation	DA	LSU rRNA	G	2838	G	2839	*	U	2878	A	2879	C	2880		cWW	cWW
5	IL_4V8P_245	4V8P	0.5982	1		D1	LSU rRNA	U	2195	G	2196	*	U	2236	A	2237	A	2239		cWW	cWW
6	IL_3Q1Q_001	3Q1Q	0.4857	0		B	RNase P class A	G	328	C	329	*	G	51	U	52	C	53		cWW	cWW	ncSH
7	IL_3SUX_002	3SUX	0.5028	0	Major groove platform	X	THF riboswitch	G	37	A	38	*	U	47	G	48	U	49		cWW	ncWW
8	IL_3SUX_005	3SUX	0.5028	0	Major groove platform	X	THF riboswitch	G	37\|\|\|\|17_555	A	38\|\|\|\|17_555	*	U	47\|\|\|\|17_555	G	48\|\|\|\|17_555	U	49\|\|\|\|17_555		cWW	ncWW
9	IL_3P49_007	3P49	0.3862	0		A	Glycine riboswitch	G	38	A	39	*	U	49	U	50	C	51		ncWW	cWW	ncSH
10	IL_3P49_010	3P49	0.3384	0		A	Glycine riboswitch	G	113	G	114	*	C	140	U	141	C	142		cWW	cWW	ncSH
11	IL_5J7L_264	5J7L	0.2742	0	Major groove platform	DA	LSU rRNA	G	757	C	758	*	G	738	A	739	C	740		cWW	cWW	cSH
12	IL_4WF9_026	4WF9	0.2059	0	Major groove platform	X	LSU rRNA	G	802	C	803	*	G	783	A	784	C	785		cWW	cWW	cSH
13	IL_4WF9_078	4WF9	0.2600	0	Major groove platform	X	LSU rRNA	C	2644	G	2645	*	C	2077	A	2078	G	2079		cWW	cWW	cSH
14	IL_4IOA_073	4IOA	0.2667	0	Major groove platform (H)	X	LSU rRNA	C	2596	G	2597	*	C	2033	A	2034	G	2035		cWW	cWW	cSH
15	IL_4Y4O_251	4Y4O	0.2477	0	Major groove platform (H)	2A	LSU rRNA	C	2617	G	2618	*	C	2050	A	2051	G	2052		cWW	cWW	cSH
16	IL_5J7L_320	5J7L	0.2086	0	Major groove platform	DA	LSU rRNA	U	2617	G	2618	*	C	2050	A	2051	A	2052	tHS	cWW	cWW	cSH
17	IL_4IOA_087	4IOA	0.2854	0		X	LSU rRNA	U	2472	G	2473	*	U	2436	G	2437	A	2438	ntHS	cWW	cWW
18	IL_4WF9_091	4WF9	0.2614	0	Major groove platform	X	LSU rRNA	U	2520	G	2521	*	U	2484	U	2485	A	2486		cWW	cWW	cSH
19	IL_4V8P_178	4V8P	0.3481	0		D1	LSU rRNA	U	473	G	474	*	U	503	A	504	A	505		cWW	ncWW	ncSH
20	IL_5TBW_104	5TBW	0.4517	0	Major groove platform	1	LSU rRNA	U	2862	G	2863	*	U	2826	U	2827	G	2828		cWW	cWW
21	IL_4V8P_266	4V8P	0.4693	0		D1	LSU rRNA	U	2850	G	2851	*	U	2814	U	2815	G	2816		cWW	cWW
22	IL_1I6U_001	1I6U	0.2845	0	Major groove platform	C	16S RRNA FRAGMENT	U	28	G	29	*	U	9	A	10	A	11	ntHS	cWW	cWW	cSH
23	IL_5J7L_028	5J7L	0.2799	0	Major groove platform	AA	SSU rRNA	U	644	G	645	*	U	594	A	595	A	596	ntHS	cWW	cWW	cSH
24	IL_4Y4O_186	4Y4O	0.2903	0	Major groove platform (H)	2A	LSU rRNA	G	272\|\|\|D	G	272\|\|\|E	*	U	363\|\|\|E	A	363\|\|\|F	C	364		cWW	cWW	ncSH
25	IL_1XJR_002	1XJR	0.2619	0	Major groove platform	A	s2m RNA	G	13	G	14	*	U	37	A	38	C	39		cWW	cWW	cSH
26	IL_4V8P_264	4V8P	0.2838	0		D1	LSU rRNA	G	2811	G	2812	*	U	2853	C	2854	C	2855		cWW	cWW	ncSH
27	IL_5TBW_102	5TBW	0.3078	0	Major groove platform	1	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH
28	IL_4Y4O_265	4Y4O	0.3141	0	Major groove platform (H)	2A	LSU rRNA	G	2414	G	2415	*	U	2401	C	2402	C	2403		cWW	cWW	ncSH
29	IL_1G1X_002	1G1X	0.2851	0	Major groove platform	D+E	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW	ncSH
30	IL_1G1X_005	1G1X	0.2642	0	Major groove platform	I+J	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW	ncSH
31	IL_4LFB_028	4LFB	0.2646	0	Major groove platform	A	SSU rRNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW
32	IL_4V5O_154	4V5O	0.3533	0		BA	SSU rRNA	U	1469	C	1470	*	G	1479	U	1480	A	1481		cWW	cWW	ncSH
33	IL_3NKB_002	3NKB	0.2712	0	Major groove platform	B	Hepatitis delta virus ribozyme	U	47	C	48	*	G	55	U	56	A	57		cWW	cWW	cSH
34	IL_4V5O_132	4V5O	0.3252	0		BA	SSU rRNA	U	1100	C	1101	*	G	1091	U	1092	A	1093		cWW	cWW	ncSH
35	IL_4V9F_044	4V9F	0.2759	1	Major groove platform	0	LSU rRNA	U	1205	U	1206	*	A	1191	A	1193	A	1194	ntHS	cWW	cWW	cSH
36	IL_1HC8_002	1HC8	0.2711	1		C	LSU rRNA	U	151	C	152	*	G	137	A	139	A	140	ntHS	cWW	cWW	cSH
37	IL_5T5A_002	5T5A	0.2231	0	Major groove platform	A	DNA/RNA (71-MER)	G	10	G	11	*	C	50	G	51	C	52		cWW	cWW	ncSH
38	IL_5Y85_005	5Y85	0.2087	0	Major groove platform	C+D	RNA (18-mer) + DNA/RNA (50-MER)	G	9	G	10	*	C	40	G	41	C	42		cWW	cWW
39	IL_4OQU_002	4OQU	0.1702	0	Major groove platform	A	SAM-I-IV-variant	U	29	G	30	*	C	42	A	43	A	44		cWW	cWW	ncSH
40	IL_1S03_008	1S03	0.1753	0	Major groove platform	B	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW	cSH
41	IL_1S03_004	1S03	0.1669	0	Major groove platform	A	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW	cSH
42	IL_4V9F_082	4V9F	0.0988	0	Major groove platform	0	LSU rRNA	G	2489	A	2490	*	U	2531	A	2532	C	2533		cWW	cWW	cSH
43	IL_4Y4O_267	4Y4O	0.0000	0	Major groove platform (H)	2A	LSU rRNA	G	2454	G	2455	*	C	2496	A	2497	C	2498		cWW	cWW	ncSH
44	IL_4IOA_086	4IOA	0.0803	0	Major groove platform (H)	X	LSU rRNA	G	2433	G	2434	*	C	2475	A	2476	C	2477		cWW	cWW	ncSH
45	IL_4WF9_090	4WF9	0.1284	0	Major groove platform	X	LSU rRNA	G	2481	G	2482	*	C	2523	A	2524	C	2525		cWW	cWW	cSH
46	IL_3OXE_003	3OXE	0.1499	0	Major groove platform	A	Glycine riboswitch	G	35	G	36	*	C	68	U	69	C	70		cWW	cWW	cSH
47	IL_3D0U_004	3D0U	0.1736	1	Major groove platform; stack outside cWW	A	Lysine riboswitch	G	51	G	52	*	C	35	A	36	C	38		cWW	cWW	cSH
48	IL_4LFB_024	4LFB	0.2669	0	Major groove platform	A	SSU rRNA	G	644	C	645	*	G	594	G	595	C	596	ntHS	cWW	cWW	ncSH
49	IL_1KUQ_001	1KUQ	0.3985	1	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	G	18	A	19	*	U	50	G	51	C	53	tHS	cWW	cWW	ncSH
50	IL_5J7L_031	5J7L	0.3559	1	Major groove platform; stack outside cWW	AA	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
51	IL_4LFB_027	4LFB	0.3692	1	Major groove platform; stack outside cWW	A	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW
52	IL_1G1X_001	1G1X	0.4041	1	Major groove platform; stack outside cWW	D+E	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
53	IL_1G1X_004	1G1X	0.3994	1	Major groove platform; stack outside cWW	I+J	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
54	IL_5J7L_306	5J7L	0.4286	1	Major groove platform; stack outside cWW	DA	LSU rRNA	U	1993	C	1994	*	G	1666	G	1667	A	1669	tHS	cWW	cWW
55	IL_5TBW_076	5TBW	0.4659	1	Major groove platform; stack outside cWW	1	LSU rRNA	U	2336	C	2337	*	G	1898	G	1899	A	1901	tHS	cWW	cWW
56	IL_4QLM_004	4QLM	0.4394	1	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	G	39	G	40	*	C	91	G	92	C	94	tHS	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GA*UGAC	5
UG*CAA	4
CG*UGG	3
GG*UAC	3
CG*CAG	3
UG*UAA	3
GG*CCC	3
UC*GUA	3
GG*CAC	3
GA*UGU	2
GG*CUC	2
GC*GAC	2
UG*UUG	2
GG*UCC	2
GG*CGC	2
UC*GGAA	2
UG*UAAA	1
GC*GUC	1
GA*UUC	1
UG*UGA	1
UG*UUA	1
GG*UUC	1
UU*AAAA	1
UC*GAAA	1
GA*UAC	1
GG*CAUC	1
GC*GGC	1
GG*CGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	19
*U	11
*G	9
*GA	7
*C	5
*AA	3
*AU	1
*GU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_80663.2 Version IL_80663.2 of this group appears in releases 3.3 to 3.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_80663.2 Version IL_80663.2 of this group appears in releases 3.3 to 3.10

Download

Csv

Json