IL_80663.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3	4-5
1	IL_4V8P_269	4V8P	0.6578	0	Major groove platform (H)	D1	LSU rRNA	C	2864	G	2865	*	U	2937	G	2938	G	2939		cWW	cWW
2	IL_5TBW_107	5TBW	0.6767	0	Major groove platform	1	LSU rRNA	C	2876	G	2877	*	U	2949	G	2950	G	2951		cWW	cWW
3	IL_4IOA_090	4IOA	0.6555	0	Major groove platform (H)	X	LSU rRNA	C	2486	G	2487	*	U	2559	G	2560	G	2561		cWW	cWW	chH
4	IL_4V8P_178	4V8P	0.3481	0		D1	LSU rRNA	U	473	G	474	*	U	503	A	504	A	505		cWW	ncWW	ncSH
5	IL_4WF9_091	4WF9	0.2614	0	Major groove platform	X	LSU rRNA	U	2520	G	2521	*	U	2484	U	2485	A	2486		cWW	cWW	cSH
6	IL_4IOA_087	4IOA	0.2854	0		X	LSU rRNA	U	2472	G	2473	*	U	2436	G	2437	A	2438	ntHS	cWW	cWW
7	IL_5J7L_320	5J7L	0.2086	0	Major groove platform	DA	LSU rRNA	U	2617	G	2618	*	C	2050	A	2051	A	2052	tHS	cWW	cWW	cSH
8	IL_4Y4O_251	4Y4O	0.2477	0	Major groove platform (H)	2A	LSU rRNA	C	2617	G	2618	*	C	2050	A	2051	G	2052		cWW	cWW	cSH
9	IL_4IOA_073	4IOA	0.2667	0	Major groove platform (H)	X	LSU rRNA	C	2596	G	2597	*	C	2033	A	2034	G	2035		cWW	cWW	cSH
10	IL_4WF9_078	4WF9	0.2600	0	Major groove platform	X	LSU rRNA	C	2644	G	2645	*	C	2077	A	2078	G	2079		cWW	cWW	cSH
11	IL_4WF9_026	4WF9	0.2059	0	Major groove platform	X	LSU rRNA	G	802	C	803	*	G	783	A	784	C	785		cWW	cWW	cSH
12	IL_5J7L_264	5J7L	0.2742	0	Major groove platform	DA	LSU rRNA	G	757	C	758	*	G	738	A	739	C	740		cWW	cWW	cSH
13	IL_3P49_010	3P49	0.3384	0		A	Glycine riboswitch	G	113	G	114	*	C	140	U	141	C	142		cWW	cWW	ncSH
14	IL_4V8P_266	4V8P	0.4693	0		D1	LSU rRNA	U	2850	G	2851	*	U	2814	U	2815	G	2816		cWW	cWW
15	IL_5TBW_104	5TBW	0.4517	0	Major groove platform	1	LSU rRNA	U	2862	G	2863	*	U	2826	U	2827	G	2828		cWW	cWW
16	IL_5J7L_028	5J7L	0.2799	0	Major groove platform	AA	SSU rRNA	U	644	G	645	*	U	594	A	595	A	596	ntHS	cWW	cWW	cSH
17	IL_1I6U_001	1I6U	0.2845	0	Major groove platform	C	16S RRNA FRAGMENT	U	28	G	29	*	U	9	A	10	A	11	ntHS	cWW	cWW	cSH
18	IL_4Y4O_186	4Y4O	0.2903	0	Major groove platform (H)	2A	LSU rRNA	G	272\|\|\|D	G	272\|\|\|E	*	U	363\|\|\|E	A	363\|\|\|F	C	364		cWW	cWW	ncSH
19	IL_1XJR_002	1XJR	0.2619	0	Major groove platform	A	s2m RNA	G	13	G	14	*	U	37	A	38	C	39		cWW	cWW	cSH
20	IL_4V8P_264	4V8P	0.2838	0		D1	LSU rRNA	G	2811	G	2812	*	U	2853	C	2854	C	2855		cWW	cWW	ncSH
21	IL_5TBW_102	5TBW	0.3078	0	Major groove platform	1	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH
22	IL_4Y4O_265	4Y4O	0.3141	0	Major groove platform (H)	2A	LSU rRNA	G	2414	G	2415	*	U	2401	C	2402	C	2403		cWW	cWW	ncSH
23	IL_1G1X_002	1G1X	0.2851	0	Major groove platform	D+E	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW	ncSH
24	IL_1G1X_005	1G1X	0.2642	0	Major groove platform	I+J	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW	ncSH
25	IL_4LFB_028	4LFB	0.2646	0	Major groove platform	A	SSU rRNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW
26	IL_4V5O_154	4V5O	0.3533	0		BA	SSU rRNA	U	1469	C	1470	*	G	1479	U	1480	A	1481		cWW	cWW	ncSH
27	IL_3NKB_002	3NKB	0.2712	0	Major groove platform	B	The hepatitis delta virus ribozyme	U	47	C	48	*	G	55	U	56	A	57		cWW	cWW	cSH
28	IL_4V5O_132	4V5O	0.3252	0		BA	SSU rRNA	U	1100	C	1101	*	G	1091	U	1092	A	1093		cWW	cWW	ncSH
29	IL_4V9F_044	4V9F	0.2759	1	Major groove platform	0	LSU rRNA	U	1205	U	1206	*	A	1191	A	1193	A	1194	ntHS	cWW	cWW	cSH
30	IL_1HC8_002	1HC8	0.2711	1		C	LSU rRNA	U	151	C	152	*	G	137	A	139	A	140	ntHS	cWW	cWW	cSH
31	IL_5T5A_002	5T5A	0.2231	0	Major groove platform	A	DNA/RNA (71-MER)	G	10	G	11	*	C	50	G	51	C	52		cWW	cWW	ncSH
32	IL_5Y85_005	5Y85	0.2087	0	Major groove platform	C+D	RNA (18-mer) + DNA/RNA (50-MER)	G	9	G	10	*	C	40	G	41	C	42		cWW	cWW
33	IL_4OQU_002	4OQU	0.1702	0	Major groove platform	A	SAM-I/IV riboswitch	U	29	G	30	*	C	42	A	43	A	44		cWW	cWW	ncSH
34	IL_1S03_008	1S03	0.1753	0	Major groove platform	B	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW	cSH
35	IL_1S03_004	1S03	0.1669	0	Major groove platform	A	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW	cSH
36	IL_4V9F_082	4V9F	0.0988	0	Major groove platform	0	LSU rRNA	G	2489	A	2490	*	U	2531	A	2532	C	2533		cWW	cWW	cSH
37	IL_4Y4O_267	4Y4O	0.0000	0	Major groove platform (H)	2A	LSU rRNA	G	2454	G	2455	*	C	2496	A	2497	C	2498		cWW	cWW	ncSH
38	IL_4IOA_086	4IOA	0.0803	0	Major groove platform (H)	X	LSU rRNA	G	2433	G	2434	*	C	2475	A	2476	C	2477		cWW	cWW	ncSH
39	IL_4WF9_090	4WF9	0.1284	0	Major groove platform	X	LSU rRNA	G	2481	G	2482	*	C	2523	A	2524	C	2525		cWW	cWW	cSH
40	IL_3OXE_003	3OXE	0.1499	0	Major groove platform	A	domain II of glycine riboswitch	G	35	G	36	*	C	68	U	69	C	70		cWW	cWW	cSH
41	IL_3D0U_004	3D0U	0.1736	1	Major groove platform; stack outside cWW	A	Lysine Riboswitch RNA	G	51	G	52	*	C	35	A	36	C	38		cWW	cWW	cSH
42	IL_4LFB_024	4LFB	0.2669	0	Major groove platform	A	SSU rRNA	G	644	C	645	*	G	594	G	595	C	596	ntHS	cWW	cWW	ncSH
43	IL_1KUQ_001	1KUQ	0.3985	1	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	G	18	A	19	*	U	50	G	51	C	53	tHS	cWW	cWW	ncSH
44	IL_5J7L_031	5J7L	0.3559	1	Major groove platform; stack outside cWW	AA	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
45	IL_4LFB_027	4LFB	0.3692	1	Major groove platform; stack outside cWW	A	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW
46	IL_1G1X_001	1G1X	0.4041	1	Major groove platform; stack outside cWW	D+E	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
47	IL_1G1X_004	1G1X	0.3994	1	Major groove platform; stack outside cWW	I+J	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW	ncSH
48	IL_5J7L_306	5J7L	0.4286	1	Major groove platform; stack outside cWW	DA	LSU rRNA	U	1993	C	1994	*	G	1666	G	1667	A	1669	tHS	cWW	cWW
49	IL_5TBW_076	5TBW	0.4659	1	Major groove platform; stack outside cWW	1	LSU rRNA	U	2336	C	2337	*	G	1898	G	1899	A	1901	tHS	cWW	cWW
50	IL_4QLM_004	4QLM	0.4394	1	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	G	39	G	40	*	C	91	G	92	C	94	tHS	cWW	cWW
51	IL_3P49_007	3P49	0.3862	0		A	Glycine riboswitch	G	38	A	39	*	U	49	U	50	C	51		ncWW	cWW	ncSH
52	IL_3SUX_005	3SUX	0.5028	0	Major groove platform	X	THF riboswitch	G	37\|\|\|\|17_555	A	38\|\|\|\|17_555	*	U	47\|\|\|\|17_555	G	48\|\|\|\|17_555	U	49\|\|\|\|17_555		cWW	ncWW
53	IL_3SUX_002	3SUX	0.5028	0	Major groove platform	X	THF riboswitch	G	37	A	38	*	U	47	G	48	U	49		cWW	ncWW
54	IL_3Q1Q_001	3Q1Q	0.4857	0		B	RNase P RNA	G	328	C	329	*	G	51	U	52	C	53		cWW	cWW	ncSH
55	IL_4V8P_245	4V8P	0.5982	1		D1	LSU rRNA	U	2195	G	2196	*	U	2236	A	2237	A	2239		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GA*UGAC	5
UG*CAA	4
CG*UGG	3
UG*UAA	3
CG*CAG	3
GG*CCC	3
UC*GUA	3
GG*CAC	3
GC*GAC	2
GG*CUC	2
UG*UUG	2
GG*UAC	2
GG*UCC	2
GG*CGC	2
UC*GGAA	2
GA*UGU	2
UG*UUA	1
UG*UGA	1
GG*UUC	1
UU*AAAA	1
UC*GAAA	1
GA*UAC	1
GG*CAUC	1
GC*GGC	1
GG*CGUC	1
GA*UUC	1
GC*GUC	1
UG*UAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	18
*U	11
*G	9
*GA	7
*C	5
*AA	3
*AU	1
*GU	1

Release history

Release	3.11
Date	2018-10-19
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_80663.3 Version IL_80663.3 of this group appears in releases 3.11 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_80663.3 Version IL_80663.3 of this group appears in releases 3.11 to 3.11

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Csv

Json