#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-34-5
1 IL_3SUX_0053SUX0.52400Major groove platformX THF riboswitchG37||||17_555A38||||17_555*U47||||17_555G48||||17_555U49||||17_555cWWncWW
2 IL_3SUX_0023SUX0.52400Major groove platformX THF riboswitchG37A38*U47G48U49cWWncWW
3 IL_6CZR_1406CZR0.38050Major groove platform1a SSU rRNAG641G642*C731C732C733cWWcWW
4 IL_3NKB_0023NKB0.24350Major groove platformBThe hepatitis delta virus ribozymeU47C48*G55U56A57cWWcWWcSH
5 IL_1G1X_0021G1X0.25750Major groove platformD+E16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
6 IL_1G1X_0051G1X0.23800Major groove platformI+J16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
7 IL_4LFB_0284LFB0.23400Major groove platformA SSU rRNAG657G658*C747C748C749cWWcWW
8 IL_5T5A_0025T5A0.16850Major groove platformADNA/RNA (71-MER)G10G11*C50G51C52cWWcWWncSH
9 IL_5Y85_0055Y850.16580Major groove platformC+DRNA (18-mer) + DNA/RNA (50-MER)G9G10*C40G41C42cWWcWW
10 IL_4OQU_0024OQU0.14690Major groove platformASAM-I/IV riboswitchU29G30*C42A43A44cWWcWWncSH
11 IL_1S03_0081S030.17510Major groove platformB47-MERU16G17*C34A35A36tHScWWcWWcSH
12 IL_1S03_0041S030.16510Major groove platformA47-MERU16G17*C34A35A36tHScWWcWWcSH
13 IL_4V9F_0824V9F0.11770Major groove platform0 LSU rRNAG2489A2490*U2531A2532C2533cWWcWWcSH
14 IL_4Y4O_2674Y4O0.08030Major groove platform (H)2A LSU rRNAG2454G2455*C2496A2497C2498cWWcWWncSH
15 IL_4IOA_0864IOA0.00000Major groove platform (H)X LSU rRNAG2433G2434*C2475A2476C2477cWWcWWncSH
16 IL_4WF9_0904WF90.11150Major groove platformX LSU rRNAG2481G2482*C2523A2524C2525cWWcWWcSH
17 IL_3OXE_0033OXE0.16820Major groove platformAdomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
18 IL_3D0U_0043D0U0.17751Major groove platform; stack outside cWWALysine Riboswitch RNAG51G52*C35A36C38cWWcWWcSH
19 IL_4LFB_0244LFB0.23840Major groove platformA SSU rRNAG644C645*G594G595C596ntHScWWcWWncSH
20 IL_1HC8_0021HC80.24441C LSU rRNAU151C152*G137A139A140ntHScWWcWWcSH
21 IL_4V9F_0444V9F0.26501Major groove platform0 LSU rRNAU1205U1206*A1191A1193A1194ntHScWWcWWcSH
22 IL_5TBW_1025TBW0.32500Major groove platform1 LSU rRNAG2823G2824*U2865U2866C2867cWWcWWncSH
23 IL_4Y4O_2654Y4O0.31600Major groove platform (H)2A LSU rRNAG2414G2415*U2401C2402C2403cWWcWWncSH
24 IL_1XJR_0021XJR0.25330Major groove platformAs2m RNAG13G14*U37A38C39cWWcWWcSH
25 IL_4Y4O_1864Y4O0.26570Major groove platform (H)2A LSU rRNAG272|||DG272|||E*U363|||EA363|||FC364cWWcWWncSH
26 IL_1I6U_0011I6U0.29380Major groove platformC16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
27 IL_5J7L_0285J7L0.28200Major groove platformAA SSU rRNAU644G645*U594A595A596ntHScWWcWWcSH
28 IL_5TBW_1045TBW0.47220Major groove platform1 LSU rRNAU2862G2863*U2826U2827G2828cWWcWW
29 IL_4WF9_0914WF90.29800Major groove platformX LSU rRNAU2520G2521*U2484U2485A2486cWWcWWcSH
30 IL_4IOA_0874IOA0.30210X LSU rRNAU2472G2473*U2436G2437A2438ntHScWWcWW
31 IL_5J7L_3205J7L0.23470Major groove platformDA LSU rRNAU2617G2618*C2050A2051A2052tHScWWcWWcSH
32 IL_4Y4O_2514Y4O0.27780Major groove platform (H)2A LSU rRNAC2617G2618*C2050A2051G2052cWWcWWcSH
33 IL_4IOA_0734IOA0.30100Major groove platform (H)X LSU rRNAC2596G2597*C2033A2034G2035cWWcWWcSH
34 IL_4WF9_0784WF90.30000Major groove platformX LSU rRNAC2644G2645*C2077A2078G2079cWWcWWcSH
35 IL_5J7L_2645J7L0.31410Major groove platformDA LSU rRNAG757C758*G738A739C740cWWcWWcSH
36 IL_4WF9_0264WF90.24290Major groove platformX LSU rRNAG802C803*G783A784C785cWWcWWcSH
37 IL_4QLM_0044QLM0.44211Major groove platform; stack outside cWWA cyclic di-AMP riboswitchG39G40*C91G92C94tHScWWcWW
38 IL_1G1X_0041G1X0.39201Major groove platform; stack outside cWWI+J16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
39 IL_1G1X_0011G1X0.39181Major groove platform; stack outside cWWD+E16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
40 IL_4LFB_0274LFB0.36011Major groove platform; stack outside cWWA SSU rRNAG654A655*U751G752C754tHScWWcWW
41 IL_5J7L_0315J7L0.35191Major groove platform; stack outside cWWAA SSU rRNAG654A655*U751G752C754tHScWWcWWncSH
42 IL_1KUQ_0011KUQ0.38731Major groove platform; stack outside cWWB16S RIBOSOMAL RNA FRAGMENTG18A19*U50G51C53tHScWWcWWncSH
43 IL_5TBW_0765TBW0.45241Major groove platform; stack outside cWW1 LSU rRNAU2336C2337*G1898G1899A1901tHScWWcWW
44 IL_5J7L_3065J7L0.41411Major groove platform; stack outside cWWDA LSU rRNAU1993C1994*G1666G1667A1669tHScWWcWW
45 IL_5TBW_1075TBW0.66510Major groove platform1 LSU rRNAC2876G2877*U2949G2950G2951cWWcWW
46 IL_4IOA_0904IOA0.64120Major groove platform (H)X LSU rRNAC2486G2487*U2559G2560G2561cWWcWWchH

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UGAC5
GG*CCC4
UG*CAA4
GG*CAC3
CG*CAG3
GA*UGU2
GG*CGC2
GG*UAC2
UG*UAA2
GC*GAC2
UC*GGAA2
CG*UGG2
UC*GUA1
GA*UAC1
GG*CUC1
GG*CAUC1
GC*GGC1
UC*GAAA1
UU*AAAA1
GG*UUC1
GG*UCC1
UG*UUG1
UG*UUA1
UG*UGA1
GG*CGUC1
Non-Watson-Crick part of the motif
SequenceCounts
*A17
*G8
*GA7
*C5
*U5
*AA2
*AU1
*GU1

Release history

Release3.183.193.203.213.223.233.24
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-16
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (28)
  • Major groove platform; stack outside cWW (9)
  • Major groove platform (H) (7)
  • (2)
  • Basepair signature
    cWW-tHS-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.40 | Max 0.87
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