Motif IL_80823.1 Version IL_80823.1 of this group appears in releases 3.89 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-8 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4GXY_009 | 4GXY | 0.4399 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | * | C | 105 | A | 106 | C | 107 | cWW | ntSH | ntHS | cWW | |
| 2 | IL_4WF9_012 | 4WF9 | 0.0000 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWS | ncWW | |
| 3 | IL_2OEU_001 | 2OEU | 0.4508 | 0 | B+A | RNA (20-mer) | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | cWW | |||
| 4 | IL_7D81_002 | 7D81 | 0.7773 | 0 | A | nadA RNA | G | 33 | G | 34 | U | 35 | G | 36 | G | 37 | * | C | 22 | G | 23 | C | 24 | cWW | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAG*CAC | 1 |
| GGAUC*GAC | 1 |
| CCAAU*AUG | 1 |
| GGUGG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*A | 1 |
| GAU*A | 1 |
| CAA*U | 1 |
| GUG*G | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Major groove minor groove platform with extra cWW (2)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.44 | Avg 0.47 | Max 0.80
Coloring options: