Motif IL_81328.1 Version IL_81328.1 of this group appears in releases 3.3 to 3.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_227 | 4V8P | 0.9537 | 0 | D1 | LSU rRNA | G | 1849 | C | 1850 | * | G | 1643 | A | 1644 | C | 1645 | cWW | cWW | |
| 2 | IL_4C7O_002 | 4C7O | 0.9050 | 0 | Single stack bend | E | SRP RNA | C | 8 | U | 9 | * | A | 36 | U | 37 | G | 38 | cWW | cWW |
| 3 | IL_5XTM_004 | 5XTM | 0.2145 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 44 | G | 45 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 4 | IL_4PCJ_004 | 4PCJ | 0.0596 | 0 | Major groove intercalation | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW |
| 5 | IL_5VCI_004 | 5VCI | 0.0000 | 0 | Major groove intercalation | A+B | RNA (22-mer) + RNA (12-mer) | A | 11 | G | 12 | * | U | 2 | A | 3 | U | 4 | cWW | cWW |
| 6 | IL_1U6B_010 | 1U6B | 0.1209 | 0 | Major groove intercalation | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 7 | IL_5DCV_005 | 5DCV | 0.1717 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 8 | IL_5WT1_001 | 5WT1 | 0.5712 | 0 | Stack outside cWW | C | tRNA | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 5 |
| GC*GAC | 1 |
| CU*AUG | 1 |
| AC*GGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 6 |
| *U | 1 |
| *G | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 |
|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (5)
- Single stack bend (1)
- (1)
- Stack outside cWW (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.99
Coloring options: