Motif IL_81328.3 Version IL_81328.3 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTA_002 | 1NTA | 0.9046 | 4 | Major groove intercalation | A+B | RNA (22-mer) + RNA (18-mer) | C | 7 | A | 8 | G | 13 | * | C | 113 | G | 114 | cWW | cWW |
| 2 | IL_4C7O_002 | 4C7O | 0.9208 | 0 | Single stack bend | E | SRP RNA | A | 36 | U | 37 | G | 38 | * | C | 8 | U | 9 | cWW | cWW |
| 3 | IL_5XTM_004 | 5XTM | 0.1814 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 44 | G | 45 | cWW | cWW |
| 4 | IL_4PCJ_004 | 4PCJ | 0.2034 | 0 | Major groove intercalation | A | trCUG-3('5) | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW |
| 5 | IL_5VCI_004 | 5VCI | 0.1717 | 0 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | A | 3 | U | 4 | * | A | 11 | G | 12 | cWW | cWW |
| 6 | IL_1U6B_010 | 1U6B | 0.1118 | 0 | Major groove intercalation | B | 197-MER | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW |
| 7 | IL_5DCV_005 | 5DCV | 0.0000 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 48 | G | 49 | cWW | cWW |
| 8 | IL_5WT1_001 | 5WT1 | 0.4616 | 0 | Stack outside cWW | C | tRNA | G | 43 | G | 44 | U | 45 | * | A | 26 | C | 27 | cWW | cWW |
| 9 | IL_1NTA_001 | 1NTA | 0.7132 | 0 | Stack outside cWW | A+B | RNA (22-mer) + RNA (18-mer) | C | 5 | G | 6 | C | 7 | * | G | 114 | G | 115 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAU*AG | 5 |
| CAUUUGG*CG | 1 |
| AUG*CU | 1 |
| GGU*AC | 1 |
| CGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 5 |
| G* | 2 |
| AUUUG* | 1 |
| U* | 1 |
- Annotations
-
- Major groove intercalation (6)
- Stack outside cWW (2)
- Single stack bend (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.54 | Max 0.95
Coloring options: