Motif IL_81389.1 Version IL_81389.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2R8S_006 | 2R8S | 0.4134 | 1 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | A | 256 | G | 257 | cWW | tSH | tHS | cWW | |
| 2 | IL_5J7L_303 | 5J7L | 0.2049 | 0 | UAA/GAN variation | DA | LSU rRNA | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | * | C | 1526 | G | 1527 | A | 1528 | G | 1529 | cWW | ntSH | tHS | cWW | |
| 3 | IL_4LFB_062 | 4LFB | 0.0000 | 0 | UAA/GAN variation | A | SSU rRNA | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | G | 1467 | A | 1468 | G | 1469 | cWW | tSH | tHS | cWW | |
| 4 | IL_3FTM_002 | 3FTM | 0.2966 | 0 | UAA/GAN related | D+C | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW | ||
| 5 | IL_5J7L_317 | 5J7L | 0.2406 | 0 | UAA/GAN related | DA | LSU rRNA | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | * | U | 1864 | U | 1865 | A | 1866 | G | 1867 | cWW | tSH | cWW | ||
| 6 | IL_2R8S_002 | 2R8S | 0.3034 | 0 | UAA/GAN related | R | P4-P6 RNA RIBOZYME DOMAIN | G | 112 | A | 113 | A | 114 | A | 115 | G | 116 | * | U | 205 | A | 206 | A | 207 | C | 208 | cWW | tSH | tHS | cWW | |
| 7 | IL_3IGI_009 | 3IGI | 0.3197 | 0 | UAA/GAN related | A | Group II catalytic intron D1-D4-3 | C | 190 | A | 191 | A | 192 | A | 193 | G | 194 | * | U | 172 | G | 173 | A | 174 | G | 175 | cWW | tSH | tHS | cWW | |
| 8 | IL_3FS0_001 | 3FS0 | 0.4125 | 0 | UAA/GAN related | B+A | RNA (11-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | tSH | ntHh | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAA*UGAG | 2 |
| CCAAG*UGCAG | 1 |
| UGAAG*CGAG | 1 |
| CGAAG*CGAG | 1 |
| CGAAG*UUAG | 1 |
| GAAAG*UAAC | 1 |
| CAAAG*UGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*GA | 2 |
| GGA*GA | 2 |
| CAA*GCA | 1 |
| GAA*UA | 1 |
| AAA*AA | 1 |
| AAA*GA | 1 |
- Annotations
-
- UAA/GAN related (5)
- UAA/GAN variation (3)
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.34 | Max 0.62
Coloring options: