RNA 3D Hub //

Motif IL_81389.1 Version IL_81389.1 of this group appears in releases 3.12 to 3.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-83-74-75-6
1 IL_2R8S_0062R8S0.41341UAA/GAN variationRP4-P6 RNA RIBOZYME DOMAINC216C217A218A219G220*U253G254A256G257cWWtSHtHScWW
2 IL_5J7L_3035J7L0.20490UAA/GAN variationDA LSU rRNAU1542G1543A1544A1545G1546*C1526G1527A1528G1529cWWntSHtHScWW
3 IL_4LFB_0624LFB0.00000UAA/GAN variationA SSU rRNAC1431G1432A1433A1434G1435*C1466G1467A1468G1469cWWtSHtHScWW
4 IL_3FTM_0023FTM0.29660UAA/GAN variationD+CRNA (12-mer)C-1G1G2A3A4*U46G47A48G49cWWntSHcWW
5 IL_5J7L_3175J7L0.24060UAA/GAN variationDA LSU rRNAC1874G1875A1876A1877G1878*U1864U1865A1866G1867cWWtSHcWW
6 IL_2R8S_0022R8S0.30340UAA/GAN variationRP4-P6 RNA RIBOZYME DOMAING112A113A114A115G116*U205A206A207C208cWWtSHtHScWW
7 IL_3IGI_0093IGI0.31970UAA/GAN relatedAGroup IIC intronC190A191A192A193G194*U172G173A174G175cWWtSHtHScWW
8 IL_3FS0_0013FS00.41250UAA/GAN relatedB+ARNA (11-mer)C-1G1G2A3A4*U46G47A48G49cWWtSHntHhcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGAA*UGAG2
CCAAG*UGCAG1
UGAAG*CGAG1
CGAAG*CGAG1
CGAAG*UUAG1
GAAAG*UAAC1
CAAAG*UGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GA2
GGA*GA2
CAA*GCA1
GAA*UA1
AAA*AA1
AAA*GA1

Release history

Release3.123.133.143.153.163.17
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-05
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UAA/GAN variation (6)
  • UAA/GAN related (2)
    • Basepair signature
    cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.20 | Avg 0.34 | Max 0.62
    Help

    Coloring options:

    IL_2R8S_006:IL_2R8S_006 = 0IL_2R8S_006:IL_5J7L_303 = 0.4096IL_2R8S_006:IL_4LFB_062 = 0.4134IL_2R8S_006:IL_3FTM_002 = 0.5614IL_2R8S_006:IL_5J7L_317 = 0.456IL_2R8S_006:IL_2R8S_002 = 0.4504IL_2R8S_006:IL_3IGI_009 = 0.5911IL_2R8S_006:IL_3FS0_001 = 0.6208IL_5J7L_303:IL_2R8S_006 = 0.4096IL_5J7L_303:IL_5J7L_303 = 0IL_5J7L_303:IL_4LFB_062 = 0.2049IL_5J7L_303:IL_3FTM_002 = 0.3395IL_5J7L_303:IL_5J7L_317 = 0.3462IL_5J7L_303:IL_2R8S_002 = 0.4462IL_5J7L_303:IL_3IGI_009 = 0.3976IL_5J7L_303:IL_3FS0_001 = 0.4503IL_4LFB_062:IL_2R8S_006 = 0.4134IL_4LFB_062:IL_5J7L_303 = 0.2049IL_4LFB_062:IL_4LFB_062 = 0IL_4LFB_062:IL_3FTM_002 = 0.2966IL_4LFB_062:IL_5J7L_317 = 0.2406IL_4LFB_062:IL_2R8S_002 = 0.3034IL_4LFB_062:IL_3IGI_009 = 0.3197IL_4LFB_062:IL_3FS0_001 = 0.4125IL_3FTM_002:IL_2R8S_006 = 0.5614IL_3FTM_002:IL_5J7L_303 = 0.3395IL_3FTM_002:IL_4LFB_062 = 0.2966IL_3FTM_002:IL_3FTM_002 = 0IL_3FTM_002:IL_5J7L_317 = 0.3053IL_3FTM_002:IL_2R8S_002 = 0.4485IL_3FTM_002:IL_3IGI_009 = 0.3411IL_3FTM_002:IL_3FS0_001 = 0.4391IL_5J7L_317:IL_2R8S_006 = 0.456IL_5J7L_317:IL_5J7L_303 = 0.3462IL_5J7L_317:IL_4LFB_062 = 0.2406IL_5J7L_317:IL_3FTM_002 = 0.3053IL_5J7L_317:IL_5J7L_317 = 0IL_5J7L_317:IL_2R8S_002 = 0.2868IL_5J7L_317:IL_3IGI_009 = 0.3003IL_5J7L_317:IL_3FS0_001 = 0.4073IL_2R8S_002:IL_2R8S_006 = 0.4504IL_2R8S_002:IL_5J7L_303 = 0.4462IL_2R8S_002:IL_4LFB_062 = 0.3034IL_2R8S_002:IL_3FTM_002 = 0.4485IL_2R8S_002:IL_5J7L_317 = 0.2868IL_2R8S_002:IL_2R8S_002 = 0IL_2R8S_002:IL_3IGI_009 = 0.3281IL_2R8S_002:IL_3FS0_001 = 0.5003IL_3IGI_009:IL_2R8S_006 = 0.5911IL_3IGI_009:IL_5J7L_303 = 0.3976IL_3IGI_009:IL_4LFB_062 = 0.3197IL_3IGI_009:IL_3FTM_002 = 0.3411IL_3IGI_009:IL_5J7L_317 = 0.3003IL_3IGI_009:IL_2R8S_002 = 0.3281IL_3IGI_009:IL_3IGI_009 = 0IL_3IGI_009:IL_3FS0_001 = 0.4179IL_3FS0_001:IL_2R8S_006 = 0.6208IL_3FS0_001:IL_5J7L_303 = 0.4503IL_3FS0_001:IL_4LFB_062 = 0.4125IL_3FS0_001:IL_3FTM_002 = 0.4391IL_3FS0_001:IL_5J7L_317 = 0.4073IL_3FS0_001:IL_2R8S_002 = 0.5003IL_3FS0_001:IL_3IGI_009 = 0.4179IL_3FS0_001:IL_3FS0_001 = 0IL_2R8S_006IL_5J7L_303IL_4LFB_062IL_3FTM_002IL_5J7L_317IL_2R8S_002IL_3IGI_009IL_3FS0_001Discrepancy0.000.100.200.300.400.500.60
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