Motif IL_81608.1 Version IL_81608.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1X8W_004 | 1X8W | 0.5790 | 0 | A | G | 129 | U | 130 | U | 131 | * | A | 192 | C | 193 | ncSH | cWW | cWW | |
| 2 | IL_2GDI_003 | 2GDI | 0.0000 | 0 | Minor groove platform | X | C | 23 | C | 24 | U | 25 | * | A | 35 | G | 36 | ncSH | cWW | cWW |
| 3 | IL_2GDI_007 | 2GDI | 0.1688 | 0 | Y | C | 23 | C | 24 | U | 25 | * | A | 35 | G | 36 | ncSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCU*AG | 2 |
| GUU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C* | 2 |
| U* | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_81608.1 | Only in the parent motif |
|---|---|---|---|
| IL_83385.2 Compare | IL_2GDI_007, IL_2GDI_003 | IL_1X8W_004 | IL_3F1H_031, IL_1FJG_038, IL_1S72_033, IL_2QWY_009, IL_3F1H_027, IL_1S72_035, IL_1FJG_004, IL_3F1H_070, IL_3G78_005, IL_1FJG_052, IL_2QWY_006, IL_1FJG_042, IL_1S72_075, IL_2QWY_003, IL_3F1H_078, IL_2ZJR_077 |
Children motifs
| Child motif | Common motif instances | Only in IL_81608.1 | Only in the child motif |
|---|---|---|---|
| IL_44540.1 Compare | IL_2GDI_007, IL_1X8W_004, IL_2GDI_003 | IL_3UXR_028, IL_3UXR_003, IL_2QBG_081, IL_2AW7_050, IL_1FJG_004, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2QWY_003, IL_2AW7_035, IL_3RW6_005, IL_3U5F_029, IL_1S72_075, IL_3U5F_062, IL_1Y0Q_003, IL_2XZM_070, IL_3IWN_001, IL_1U6B_007, IL_2ZJR_027, IL_2ZJR_003, IL_2AW7_045, IL_3U5H_041, IL_2QWY_009, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_4A1B_020, IL_1FJG_052, IL_1FJG_051, IL_3UXR_078, IL_3RW6_001, IL_2XZM_061, IL_2XZM_005, IL_1S72_033, IL_1FJG_038, IL_3U5F_071, IL_1S72_035, IL_3U5F_005, IL_3UXR_070, IL_4A1B_096, IL_3U5H_099, IL_2ZJR_077 |
- Annotations
-
- (2)
- Minor groove platform (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.30 | Max 0.60
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