Motif IL_82367.4 Version IL_82367.4 of this group appears in releases 0.5 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_038 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | G | 1070 | U | 1071 | G | 1073 | * | C | 1087 | A | 1088 | C | 1089 | C | 1090 | cWW | cWW |
| 2 | IL_1QA6_001 | 1QA6 | 0.1628 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | U | 128 | C | 129 | cWW | cWW |
| 3 | IL_1MMS_001 | 1MMS | 0.1487 | 1 | C | 23S RIBOSOMAL RNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW |
| 4 | IL_1MMS_003 | 1MMS | 0.1493 | 1 | D | 23S RIBOSOMAL RNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW |
| 5 | IL_1QA6_003 | 1QA6 | 0.1796 | 1 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | U | 128 | C | 129 | cWW | cWW |
| 6 | IL_2QBG_043 | 2QBG | 0.1796 | 1 | B | 23S rRNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | U | 1078 | C | 1079 | cWW | cWW |
| 7 | IL_2OEU_002 | 2OEU | 0.8136 | 1 | B+A | RNA (20-mer) | A | 12 | U | 13 | C | 14 | * | G | 5 | U | 6 | A | 7 | U | 9 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUG*CAUC | 3 |
| GUAG*CAUC | 2 |
| GUUG*CACC | 1 |
| AUC*GUACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*AU | 3 |
| UA*AU | 2 |
| UU*AC | 1 |
| U*UAC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_82367.4 | Only in the parent motif |
|---|---|---|---|
| IL_82367.3 Compare | IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001, IL_2OEU_002, IL_1MMS_003, IL_1MMS_001 | IL_2QBG_043 |
Children motifs
| Child motif | Common motif instances | Only in IL_82367.4 | Only in the child motif |
|---|---|---|---|
| IL_98556.1 Compare | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001, IL_2OEU_002 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003 |
- Annotations
-
- (7)
- Basepair signature
- 07_cWW--cWW
- Heat map statistics
- Min 0.00 | Avg 0.27 | Max 0.81
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