Motif IL_98556.1 Version IL_98556.1 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OEU_002 | 2OEU | 0.7417 | 1 | A+B | Hammerhead Ribozyme + RNA (20-mer) | G | 5 | U | 6 | A | 7 | U | 9 | * | A | 12 | U | 13 | C | 14 | cWW | cWW |
| 2 | IL_1QA6_001 | 1QA6 | 0.0000 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 126 | A | 127 | U | 128 | C | 129 | * | G | 109 | U | 110 | G | 112 | cWW | cWW |
| 3 | IL_2QBG_043 | 2QBG | 0.1682 | 1 | B | 23S rRNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW |
| 4 | IL_2ZJR_038 | 2ZJR | 0.1796 | 1 | X | LSU rRNA | C | 1087 | A | 1088 | C | 1089 | C | 1090 | * | G | 1070 | U | 1071 | G | 1073 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUACU*AUC | 1 |
| CAUC*GUAG | 1 |
| CAUC*GUUG | 1 |
| CACC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAC*U | 1 |
| AU*UA | 1 |
| AU*UU | 1 |
| AC*UU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_98556.1 | Only in the parent motif |
|---|---|---|---|
| IL_82367.4 Compare | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001, IL_2OEU_002 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_98556.1 | Only in the child motif |
|---|---|---|---|
| IL_98556.2 Compare | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 | IL_2OEU_002 | IL_2ZI0_001 |
| IL_06780.1 Compare | IL_2OEU_002 | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.16 | Avg 0.36 | Max 0.81
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