Motif IL_82563.1 Version IL_82563.1 of this group appears in releases 0.1 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2GDI_002 | 2GDI | 0.0583 | 0 | X | TPP riboswitch | U | 20 | G | 21 | * | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | cWW | cWW | tWH | |
| 2 | IL_2GDI_006 | 2GDI | 0.0000 | 0 | Y | TPP riboswitch | U | 20 | G | 21 | * | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | cWW | cWW | tWH | |
| 3 | IL_2HOJ_002 | 2HOJ | 0.3370 | 0 | A | thi-box riboswitch | U | 20 | G | 21 | * | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CUGAGAAA | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UGAGAA | 3 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tWH-R-R-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.16 | Max 0.34
Coloring options: