Motif IL_82563.1 Version IL_82563.1 of this group appears in releases 0.1 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2	break		3		4		5		6		7		8		9		10	1-10	2-3	4-8
1	IL_2GDI_002	2GDI	0.0583	0	X	TPP riboswitch (THI element)	U	20	G	21	*	C	38	U	39	G	40	A	41	G	42	A	43	A	44	A	45	cWW	cWW	tWH
2	IL_2GDI_006	2GDI	0.0000	0	Y	TPP riboswitch (THI element)	U	20	G	21	*	C	38	U	39	G	40	A	41	G	42	A	43	A	44	A	45	cWW	cWW	tWH
3	IL_2HOJ_002	2HOJ	0.3370	0	A	TPP riboswitch (THI element)	U	20	G	21	*	C	38	U	39	G	40	A	41	G	42	A	43	A	44	A	45	cWW	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*CUGAGAAA	3

Non-Watson-Crick part of the motif

Sequence	Counts
*UGAGAA	3

Release history

Release	0.1	0.2	0.3	0.4	0.5	0.6	0.7	0.8	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.17	1.18
Date	2011-12-08	2011-12-08	2011-12-08	2011-12-08	2011-12-08	2012-04-02	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-20	2014-09-04	2014-10-07
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-R-tWH-R-R-R-cWW
Heat map statistics: Min 0.06 | Avg 0.16 | Max 0.34

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Coloring options: Nucleotide numbers

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