IL_82822.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_3U5H_019	3U5H	0.5476	1		5	25S rRNA	U	512	G	513	*	C	577	G	579	cWW	cWW
2	IL_4FAW_014	4FAW	0.7955	2		A	Group II catalytic intron D1-D4-1	U	365	A	366	*	U	375	G	378	cWW	cWW
3	IL_3J7A_076	3J7A	0.7960	1		A	SSU rRNA	U	2035	A	2036	*	U	1953	G	1955	cWW	cWW
4	IL_4W23_078	4W23	0.8261	1		2	18S ribosomal RNA	U	1812	A	1813	*	U	1720	G	1722	cWW	cWW
5	IL_4W21_079	4W21	0.7429	1		5	28S ribosomal RNA	C	2062	G	2063	*	C	1920	G	1922	cWW	cWW
6	IL_3U5H_063	3U5H	0.8187	1		5	25S rRNA	C	1420	G	1421	*	C	1385	G	1387	cWW	cWW
7	IL_4C7O_003	4C7O	0.8595	1	Single bulged C	E	SRP RNA	C	12	G	13	*	C	31	G	33	cWW	cWW
8	IL_397D_001	397D	0.8106	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
9	IL_1VW3_060	1VW3	0.8980	2		A	21S ribosomal RNA	G	1833	C	1834	*	G	1864	U	1867	cWW	cWW
10	IL_1S72_070	1S72	0.8918	2		0	LSU rRNA	G	1974	C	1975	*	G	2005	U	2008	cWW	cWW
11	IL_1VX6_096	1VX6	0.8587	2		A	28S ribosomal RNA	G	2569	C	2570	*	G	2600	U	2603	cWW	cWW
12	IL_3U5H_094	3U5H	0.8938	2		5	25S rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
13	IL_4CUV_097	4CUV	0.8548	2		1	25S RRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
14	IL_4A1B_091	4A1B	0.7818	2		1	26S RRNA	G	2271	C	2272	*	G	2302	U	2305	cWW	cWW
15	IL_4IOA_071	4IOA	0.7371	2		X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
16	IL_2QBG_076	2QBG	0.6871	2		B	23S rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
17	IL_4QCN_072	4QCN	0.7002	2		A	23S Ribosomal RNA	G	1955	C	1956	*	G	1986	C	1989	cWW	cWW
18	IL_4W21_120	4W21	0.7869	2		5	28S ribosomal RNA	G	3780	C	3781	*	G	3811	U	3814	cWW	cWW
19	IL_1MJI_001	1MJI	0.3771	2		C	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
20	IL_1U9S_006	1U9S	0.2913	1	Major groove intercalation	A	RIBONUCLEASE P	G	140	G	141	*	U	158	C	160	cWW	ncWW
21	IL_1S72_099	1S72	0.1734	1	Major groove intercalation (H)	9	5S rRNA	C	15	G	16	*	C	64	G	66	cWW	cWW
22	IL_4QCN_108	4QCN	0.1730	1		B	5S Ribosomal RNA	C	17	G	18	*	C	65	G	67	cWW	cWW
23	IL_1S72_022	1S72	0.0982	2	Multiple bulged bases (H)	0	LSU rRNA	C	726	G	727	*	C	699	G	702	cWW	cWW
24	IL_2AW7_005	2AW7	0.0913	2		A	16S ribosomal RNA	U	103	G	104	*	C	63	A	66	cWW	cWW
25	IL_2QBG_060	2QBG	0.0000	1		B	23S rRNA	C	1499	G	1500	*	C	1489	G	1491	cWW	cWW
26	IL_1FJG_005	1FJG	0.1120	2	Multiple bulged bases (H)	A	SSU rRNA	C	103	G	104	*	C	63	G	66	cWW	cWW
27	IL_2NZ4_007	2NZ4	0.1531	1		R+G	GlmS ribozyme	C	52	G	53	*	C	5	G	7	cWW	cWW
28	IL_4QCN_058	4QCN	0.2571	1		A	23S Ribosomal RNA	C	1545	G	1546	*	U	1535	G	1537	cWW	cWW
29	IL_3U5H_137	3U5H	0.2393	1		5	25S rRNA	C	3324	G	3325	*	U	3381	G	3383	cWW	cWW
30	IL_4CUV_143	4CUV	0.2957	1		1	25S RRNA	C	3324	G	3325	*	U	3381	G	3383	cWW	cWW
31	IL_2QBG_107	2QBG	0.2680	1		B	23S rRNA	G	2838	G	2839	*	U	2878	C	2880	cWW	cWW
32	IL_4IOA_101	4IOA	0.2755	1	Single bulged G	X	LSU rRNA	G	2813	G	2814	*	U	2853	C	2855	cWW	cWW
33	IL_3D0U_005	3D0U	0.3178	1	Single bulged G	A	Lysine Riboswitch RNA	C	81	G	82	*	U	106	G	108	ncWW	cWW
34	IL_1S72_042	1S72	0.2313	1	Single bulged G (H)	0	LSU rRNA	C	1225	G	1226	*	U	1136	G	1138	cWW	cWW
35	IL_4A1B_063	4A1B	0.2761	1		1	26S RRNA	U	1437	A	1438	*	U	1424	G	1426	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GC*GCAU	7
CG*CAG	5
UA*UUG	3
GC*GCAC	3
CG*CCG	2
GG*UGC	2
CG*UUG	2
CG*UGG	2
UG*CAG	1
UA*UACG	1
CU*AUCUG	1
CC*GAAG	1
CG*CAUG	1
UG*CGAA	1
CG*CGUG	1
CG*UAG	1
GG*UAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*CA	10
*A	8
*U	5
*G	4
*C	2
*AC	1
*UCU	1
*AA	1
*AU	1
*GA	1
*GU	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_82822.2	Only in the parent motif
IL_82822.1 Compare	IL_4CUV_143, IL_4QCN_072, IL_1FJG_005, IL_1MJI_001, IL_4IOA_071, IL_397D_001, IL_4FAW_014, IL_2AW7_005, IL_1VX6_096, IL_2QBG_107, IL_1VW3_060, IL_4CUV_097, IL_1U9S_006, IL_3D0U_005, IL_1S72_022, IL_4QCN_108, IL_2NZ4_007, IL_4C7O_003, IL_4A1B_063, IL_4IOA_101, IL_3U5H_137, IL_1S72_099, IL_1S72_070, IL_1S72_042, IL_3U5H_063, IL_4QCN_058, IL_3J7A_076, IL_2QBG_076, IL_3U5H_094, IL_2QBG_060, IL_4A1B_091, IL_3U5H_019	IL_4W21_079, IL_4W23_078, IL_4W21_120	IL_1VWW_081

Children motifs

This motif has no children motifs.

Motif IL_82822.2 Version IL_82822.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_82822.2 Version IL_82822.2 of this group appears in releases 1.18 to 1.18

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Csv

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