Motif IL_82831.1 Version IL_82831.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-6 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UXR_084 | 3UXR | 0.8573 | 1 | A | 23S ribosomal RNA | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | cWW | ntSH | ntHS | cWW | ||
| 2 | IL_2AW7_038 | 2AW7 | 0.0000 | 1 | A | 16S ribosomal RNA | U | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | U | 701 | G | 703 | A | 704 | G | 705 | A | 706 | cWW | tSH | tWH | tHS | cWW | |
| 3 | IL_2ZJR_051 | 2ZJR | 0.6372 | 1 | Kink-turn (H) | X | LSU rRNA | U | 1426 | G | 1427 | G | 1428 | A | 1429 | G | 1430 | * | C | 1598 | G | 1599 | U | 1601 | G | 1602 | A | 1603 | A | 1604 | A | 1605 | cWW | tSH | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*CUGUGAAC | 1 |
| UGUAG*CGUAGAGA | 1 |
| UGGAG*CGUUGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*UGUGAA | 1 |
| GUA*GUAGAG | 1 |
| GGA*GUUGAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82831.1 | Only in the parent motif |
|---|---|---|---|
| IL_45155.1 Compare | IL_2AW7_038 | IL_3UXR_084, IL_2ZJR_051 | |
| IL_83485.1 Compare | IL_2ZJR_051 | IL_2AW7_038, IL_3UXR_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_82831.1 | Only in the child motif |
|---|---|---|---|
| IL_82831.2 Compare | IL_2AW7_038, IL_2ZJR_051 | IL_3UXR_084 |
- Annotations
-
- (2)
- Kink-turn (H) (1)
- Basepair signature
- 12_cWW-tSH--tHS-cWW
- Heat map statistics
- Min 0.64 | Avg 0.53 | Max 0.89
Coloring options: