Motif IL_82831.2 Version IL_82831.2 of this group appears in releases 0.7 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-10 | 5-6 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_051 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | U | 1426 | G | 1427 | G | 1428 | A | 1429 | G | 1430 | * | C | 1598 | G | 1599 | U | 1600 | U | 1601 | G | 1602 | A | 1603 | A | 1604 | A | 1605 | cWW | tSH | ntSH | cWW | ||
| 2 | IL_2AW7_038 | 2AW7 | 0.9637 | 0 | A | 16S ribosomal RNA | U | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | U | 701 | A | 702 | G | 703 | A | 704 | G | 705 | A | 706 | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAG*CGUUGAAA | 1 |
| UGUAG*CGUAGAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GUUGAA | 1 |
| GUA*GUAGAG | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82831.2 | Only in the parent motif |
|---|---|---|---|
| IL_82831.1 Compare | IL_2AW7_038, IL_2ZJR_051 | IL_3UXR_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_82831.2 | Only in the child motif |
|---|---|---|---|
| IL_59934.1 Compare | IL_2AW7_038 | IL_2ZJR_051 | |
| IL_48918.1 Compare | IL_2ZJR_051 | IL_2AW7_038 | IL_3UMY_004, IL_4B5R_002 |
- Annotations
- Basepair signature
- cWW-tSH-L-R-R-R-R-R-L-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: