#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3break 4 51-53-4
1 IL_7A0S_0927A0S0.89012Other ILXC2570G2571U2572*A2579G2582cWWcWW
2 IL_2O3X_0032O3X0.63742Decoding loop relatedB+AC30A31C32*G16G19cWWcWW
3 IL_2ET8_0012ET80.71881Stack and bulgeB+AG41U42C43*G4C6cWWcWW
4 IL_2O3X_0012O3X0.72191Stack and bulgeB+AG42U43C44*G5C7cWWcWW
5 IL_5VCI_0055VCI0.66050Not an internal loopA+BG13C14C15*G22C1cWWcWW
6 IL_4WF9_0474WF90.79051Intercalated cWWXG1266A1267C1268*G1257U1259cWWcWW
7 IL_7A0S_0447A0S0.55501Intercalated cWWXG1241A1242G1243*U1232C1234cWWcWW
8 IL_7RQB_0677RQB0.00005Intercalated tWH1AC1990U1991U1993*A1669G1674cWWcWW
9 IL_7A0S_0627A0S0.09515Intercalated tWHXC1973U1974U1976*A1686G1691cWWcWW
10 IL_5J7L_3075J7L0.09225Intercalated tWHDAC1990U1991U1993*A1669G1674cWWcWW
11 IL_4WF9_0654WF90.11985Intercalated tWHXC2017U2018U2020*A1713G1718cWWcWW
12 IL_4V9F_0624V9F0.13575Intercalated tWH0C2031U2032U2034*A1747G1752cWWcWW
13 IL_5TBW_0775TBW0.16955Intercalated tWH1C2333U2334U2336*A1901G1906cWWcWW
14 IL_8C3A_0838C3A0.174351C2311U2312U2314*A1897G1902cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC2
CUGU*AGUCGG2
CGU*ACAG1
CAC*GAAG1
GCC*GC1
GAC*GAU1
GAG*UAC1
CUGU*ACUCUG1
CUGU*ACUUUG1
CUGU*ACUAGG1
CUGU*ACUCGG1
CUGU*AUUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U2
A*A2
UG*GUCG2
G*CA1
A*AA1
C*1
UG*CUCU1
UG*CUUU1
UG*CUAG1
UG*CUCG1
UG*UUCG1

Release history

Release3.803.813.823.833.84
Date2024-01-312024-02-282024-03-272024-04-242024-05-22
StatusUpdated, 1 parentExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Intercalated tWH (6)
  • Stack and bulge (2)
  • Intercalated cWW (2)
  • Decoding loop related (1)
  • Not an internal loop (1)
  • Other IL (1)
  • (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.07 | Avg 0.47 | Max 0.95
    Help

    Coloring options:

    IL_7A0S_092:IL_7A0S_092 = 0IL_7A0S_092:IL_2O3X_003 = 0.1282IL_7A0S_092:IL_2ET8_001 = 0.3695IL_7A0S_092:IL_2O3X_001 = 0.429IL_7A0S_092:IL_5VCI_005 = 0.4138IL_7A0S_092:IL_4WF9_047 = 0.6145IL_7A0S_092:IL_7A0S_044 = 0.4101IL_7A0S_092:IL_7RQB_067 = 0.8901IL_7A0S_092:IL_7A0S_062 = 0.9187IL_7A0S_092:IL_5J7L_307 = 0.8937IL_7A0S_092:IL_4WF9_065 = 0.916IL_7A0S_092:IL_4V9F_062 = 0.9157IL_7A0S_092:IL_5TBW_077 = 0.9402IL_7A0S_092:IL_8C3A_083 = 0.954IL_2O3X_003:IL_7A0S_092 = 0.1282IL_2O3X_003:IL_2O3X_003 = 0IL_2O3X_003:IL_2ET8_001 = 0.2934IL_2O3X_003:IL_2O3X_001 = 0.3501IL_2O3X_003:IL_5VCI_005 = 0.348IL_2O3X_003:IL_4WF9_047 = 0.5337IL_2O3X_003:IL_7A0S_044 = 0.3115IL_2O3X_003:IL_7RQB_067 = 0.6374IL_2O3X_003:IL_7A0S_062 = 0.6694IL_2O3X_003:IL_5J7L_307 = 0.6535IL_2O3X_003:IL_4WF9_065 = 0.6926IL_2O3X_003:IL_4V9F_062 = 0.7197IL_2O3X_003:IL_5TBW_077 = 0.7137IL_2O3X_003:IL_8C3A_083 = 0.711IL_2ET8_001:IL_7A0S_092 = 0.3695IL_2ET8_001:IL_2O3X_003 = 0.2934IL_2ET8_001:IL_2ET8_001 = 0IL_2ET8_001:IL_2O3X_001 = 0.1302IL_2ET8_001:IL_5VCI_005 = 0.2364IL_2ET8_001:IL_4WF9_047 = 0.3063IL_2ET8_001:IL_7A0S_044 = 0.2396IL_2ET8_001:IL_7RQB_067 = 0.7188IL_2ET8_001:IL_7A0S_062 = 0.7521IL_2ET8_001:IL_5J7L_307 = 0.7371IL_2ET8_001:IL_4WF9_065 = 0.7734IL_2ET8_001:IL_4V9F_062 = 0.8025IL_2ET8_001:IL_5TBW_077 = 0.7962IL_2ET8_001:IL_8C3A_083 = 0.7794IL_2O3X_001:IL_7A0S_092 = 0.429IL_2O3X_001:IL_2O3X_003 = 0.3501IL_2O3X_001:IL_2ET8_001 = 0.1302IL_2O3X_001:IL_2O3X_001 = 0IL_2O3X_001:IL_5VCI_005 = 0.1721IL_2O3X_001:IL_4WF9_047 = 0.2527IL_2O3X_001:IL_7A0S_044 = 0.2741IL_2O3X_001:IL_7RQB_067 = 0.7219IL_2O3X_001:IL_7A0S_062 = 0.7473IL_2O3X_001:IL_5J7L_307 = 0.7337IL_2O3X_001:IL_4WF9_065 = 0.7748IL_2O3X_001:IL_4V9F_062 = 0.7982IL_2O3X_001:IL_5TBW_077 = 0.7836IL_2O3X_001:IL_8C3A_083 = 0.7704IL_5VCI_005:IL_7A0S_092 = 0.4138IL_5VCI_005:IL_2O3X_003 = 0.348IL_5VCI_005:IL_2ET8_001 = 0.2364IL_5VCI_005:IL_2O3X_001 = 0.1721IL_5VCI_005:IL_5VCI_005 = 0IL_5VCI_005:IL_4WF9_047 = 0.2984IL_5VCI_005:IL_7A0S_044 = 0.2924IL_5VCI_005:IL_7RQB_067 = 0.6605IL_5VCI_005:IL_7A0S_062 = 0.6675IL_5VCI_005:IL_5J7L_307 = 0.6588IL_5VCI_005:IL_4WF9_065 = 0.7006IL_5VCI_005:IL_4V9F_062 = 0.7201IL_5VCI_005:IL_5TBW_077 = 0.6985IL_5VCI_005:IL_8C3A_083 = 0.6913IL_4WF9_047:IL_7A0S_092 = 0.6145IL_4WF9_047:IL_2O3X_003 = 0.5337IL_4WF9_047:IL_2ET8_001 = 0.3063IL_4WF9_047:IL_2O3X_001 = 0.2527IL_4WF9_047:IL_5VCI_005 = 0.2984IL_4WF9_047:IL_4WF9_047 = 0IL_4WF9_047:IL_7A0S_044 = 0.3513IL_4WF9_047:IL_7RQB_067 = 0.7905IL_4WF9_047:IL_7A0S_062 = 0.8059IL_4WF9_047:IL_5J7L_307 = 0.7895IL_4WF9_047:IL_4WF9_065 = 0.8278IL_4WF9_047:IL_4V9F_062 = 0.8557IL_4WF9_047:IL_5TBW_077 = 0.8411IL_4WF9_047:IL_8C3A_083 = 0.8259IL_7A0S_044:IL_7A0S_092 = 0.4101IL_7A0S_044:IL_2O3X_003 = 0.3115IL_7A0S_044:IL_2ET8_001 = 0.2396IL_7A0S_044:IL_2O3X_001 = 0.2741IL_7A0S_044:IL_5VCI_005 = 0.2924IL_7A0S_044:IL_4WF9_047 = 0.3513IL_7A0S_044:IL_7A0S_044 = 0IL_7A0S_044:IL_7RQB_067 = 0.555IL_7A0S_044:IL_7A0S_062 = 0.5898IL_7A0S_044:IL_5J7L_307 = 0.5746IL_7A0S_044:IL_4WF9_065 = 0.6131IL_7A0S_044:IL_4V9F_062 = 0.6435IL_7A0S_044:IL_5TBW_077 = 0.6447IL_7A0S_044:IL_8C3A_083 = 0.6293IL_7RQB_067:IL_7A0S_092 = 0.8901IL_7RQB_067:IL_2O3X_003 = 0.6374IL_7RQB_067:IL_2ET8_001 = 0.7188IL_7RQB_067:IL_2O3X_001 = 0.7219IL_7RQB_067:IL_5VCI_005 = 0.6605IL_7RQB_067:IL_4WF9_047 = 0.7905IL_7RQB_067:IL_7A0S_044 = 0.555IL_7RQB_067:IL_7RQB_067 = 0IL_7RQB_067:IL_7A0S_062 = 0.0951IL_7RQB_067:IL_5J7L_307 = 0.0922IL_7RQB_067:IL_4WF9_065 = 0.1198IL_7RQB_067:IL_4V9F_062 = 0.1357IL_7RQB_067:IL_5TBW_077 = 0.1695IL_7RQB_067:IL_8C3A_083 = 0.1743IL_7A0S_062:IL_7A0S_092 = 0.9187IL_7A0S_062:IL_2O3X_003 = 0.6694IL_7A0S_062:IL_2ET8_001 = 0.7521IL_7A0S_062:IL_2O3X_001 = 0.7473IL_7A0S_062:IL_5VCI_005 = 0.6675IL_7A0S_062:IL_4WF9_047 = 0.8059IL_7A0S_062:IL_7A0S_044 = 0.5898IL_7A0S_062:IL_7RQB_067 = 0.0951IL_7A0S_062:IL_7A0S_062 = 0IL_7A0S_062:IL_5J7L_307 = 0.1071IL_7A0S_062:IL_4WF9_065 = 0.1148IL_7A0S_062:IL_4V9F_062 = 0.143IL_7A0S_062:IL_5TBW_077 = 0.1669IL_7A0S_062:IL_8C3A_083 = 0.1674IL_5J7L_307:IL_7A0S_092 = 0.8937IL_5J7L_307:IL_2O3X_003 = 0.6535IL_5J7L_307:IL_2ET8_001 = 0.7371IL_5J7L_307:IL_2O3X_001 = 0.7337IL_5J7L_307:IL_5VCI_005 = 0.6588IL_5J7L_307:IL_4WF9_047 = 0.7895IL_5J7L_307:IL_7A0S_044 = 0.5746IL_5J7L_307:IL_7RQB_067 = 0.0922IL_5J7L_307:IL_7A0S_062 = 0.1071IL_5J7L_307:IL_5J7L_307 = 0IL_5J7L_307:IL_4WF9_065 = 0.073IL_5J7L_307:IL_4V9F_062 = 0.1027IL_5J7L_307:IL_5TBW_077 = 0.1363IL_5J7L_307:IL_8C3A_083 = 0.1482IL_4WF9_065:IL_7A0S_092 = 0.916IL_4WF9_065:IL_2O3X_003 = 0.6926IL_4WF9_065:IL_2ET8_001 = 0.7734IL_4WF9_065:IL_2O3X_001 = 0.7748IL_4WF9_065:IL_5VCI_005 = 0.7006IL_4WF9_065:IL_4WF9_047 = 0.8278IL_4WF9_065:IL_7A0S_044 = 0.6131IL_4WF9_065:IL_7RQB_067 = 0.1198IL_4WF9_065:IL_7A0S_062 = 0.1148IL_4WF9_065:IL_5J7L_307 = 0.073IL_4WF9_065:IL_4WF9_065 = 0IL_4WF9_065:IL_4V9F_062 = 0.1084IL_4WF9_065:IL_5TBW_077 = 0.1611IL_4WF9_065:IL_8C3A_083 = 0.1508IL_4V9F_062:IL_7A0S_092 = 0.9157IL_4V9F_062:IL_2O3X_003 = 0.7197IL_4V9F_062:IL_2ET8_001 = 0.8025IL_4V9F_062:IL_2O3X_001 = 0.7982IL_4V9F_062:IL_5VCI_005 = 0.7201IL_4V9F_062:IL_4WF9_047 = 0.8557IL_4V9F_062:IL_7A0S_044 = 0.6435IL_4V9F_062:IL_7RQB_067 = 0.1357IL_4V9F_062:IL_7A0S_062 = 0.143IL_4V9F_062:IL_5J7L_307 = 0.1027IL_4V9F_062:IL_4WF9_065 = 0.1084IL_4V9F_062:IL_4V9F_062 = 0IL_4V9F_062:IL_5TBW_077 = 0.0922IL_4V9F_062:IL_8C3A_083 = 0.1063IL_5TBW_077:IL_7A0S_092 = 0.9402IL_5TBW_077:IL_2O3X_003 = 0.7137IL_5TBW_077:IL_2ET8_001 = 0.7962IL_5TBW_077:IL_2O3X_001 = 0.7836IL_5TBW_077:IL_5VCI_005 = 0.6985IL_5TBW_077:IL_4WF9_047 = 0.8411IL_5TBW_077:IL_7A0S_044 = 0.6447IL_5TBW_077:IL_7RQB_067 = 0.1695IL_5TBW_077:IL_7A0S_062 = 0.1669IL_5TBW_077:IL_5J7L_307 = 0.1363IL_5TBW_077:IL_4WF9_065 = 0.1611IL_5TBW_077:IL_4V9F_062 = 0.0922IL_5TBW_077:IL_5TBW_077 = 0IL_5TBW_077:IL_8C3A_083 = 0.0927IL_8C3A_083:IL_7A0S_092 = 0.954IL_8C3A_083:IL_2O3X_003 = 0.711IL_8C3A_083:IL_2ET8_001 = 0.7794IL_8C3A_083:IL_2O3X_001 = 0.7704IL_8C3A_083:IL_5VCI_005 = 0.6913IL_8C3A_083:IL_4WF9_047 = 0.8259IL_8C3A_083:IL_7A0S_044 = 0.6293IL_8C3A_083:IL_7RQB_067 = 0.1743IL_8C3A_083:IL_7A0S_062 = 0.1674IL_8C3A_083:IL_5J7L_307 = 0.1482IL_8C3A_083:IL_4WF9_065 = 0.1508IL_8C3A_083:IL_4V9F_062 = 0.1063IL_8C3A_083:IL_5TBW_077 = 0.0927IL_8C3A_083:IL_8C3A_083 = 0IL_7A0S_092IL_2O3X_003IL_2ET8_001IL_2O3X_001IL_5VCI_005IL_4WF9_047IL_7A0S_044IL_7RQB_067IL_7A0S_062IL_5J7L_307IL_4WF9_065IL_4V9F_062IL_5TBW_077IL_8C3A_083Discrepancy0.000.200.400.600.80
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