Motif IL_83039.1 Version IL_83039.1 of this group appears in releases 3.3 to 3.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V8P_263 | 4V8P | 0.3304 | 1 | D1 | LSU rRNA | A | 2774 | G | 2775 | * | C | 2760 | U | 2762 | cWW | cWW | |
2 | IL_4KZD_001 | 4KZD | 0.2389 | 1 | Single bulged U | R | RNA (84-MER) | C | 10 | G | 11 | * | C | 74 | G | 76 | cWW | cWW |
3 | IL_4V8P_246 | 4V8P | 0.2901 | 1 | D1 | LSU rRNA | C | 2232 | G | 2233 | * | C | 2199 | G | 2201 | cWW | cWW | |
4 | IL_5TBW_086 | 5TBW | 0.3281 | 1 | Single bulged U | 1 | LSU rRNA | C | 2237 | G | 2238 | * | C | 2204 | G | 2206 | cWW | cWW |
5 | IL_4WF9_088 | 4WF9 | 0.2939 | 1 | Single bulged U | X | LSU rRNA | G | 2441 | G | 2442 | * | U | 2428 | C | 2430 | cWW | cWW |
6 | IL_5J7L_334 | 5J7L | 0.3623 | 1 | Single bulged U | DA | LSU rRNA | G | 2414 | G | 2415 | * | U | 2401 | C | 2403 | cWW | cWW |
7 | IL_5LYS_008 | 5LYS | 0.4253 | 1 | Single bulged U | B | 7SK RNA | C | 45 | G | 46 | * | C | 62 | G | 64 | cWW | cWW |
8 | IL_5TBW_131 | 5TBW | 0.5596 | 1 | Single bulged U | 1 | LSU rRNA | C | 3324 | G | 3325 | * | U | 3381 | G | 3383 | cWW | cWW |
9 | IL_3IWN_003 | 3IWN | 0.5141 | 1 | Major groove intercalation | A | C-di-GMP riboswitch | G | 81 | G | 82 | * | C | 42 | C | 44 | cWW | cWW |
10 | IL_3MXH_003 | 3MXH | 0.4611 | 1 | Major groove intercalation | R | c-di-GMP riboswitch | G | 86 | G | 87 | * | C | 52 | C | 54 | cWW | cWW |
11 | IL_1MJI_003 | 1MJI | 0.3703 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
12 | IL_1ET4_002 | 1ET4 | 0.3376 | 1 | Major groove intercalation | A | RNA APTAMER, 35-MER | C | 218 | C | 219 | * | G | 226 | G | 228 | cWW | cWW |
13 | IL_2R8S_004 | 2R8S | 0.3505 | 1 | Single bulged U | R | P4-P6 RNA RIBOZYME DOMAIN | A | 192 | C | 193 | * | G | 129 | U | 131 | cWW | cWW |
14 | IL_2A64_002 | 2A64 | 0.4268 | 1 | Single bulged U | A | ribonuclease P RNA | G | 395 | C | 396 | * | G | 51 | C | 53 | cWW | cWW |
15 | IL_4WF9_030 | 4WF9 | 0.4698 | 1 | Single bulged U | X | LSU rRNA | A | 897 | U | 898 | * | A | 969 | U | 971 | cWW | cWW |
16 | IL_4O26_001 | 4O26 | 0.4718 | 1 | Single bulged U | E | Telomerase TR | G | 193 | C | 194 | * | G | 181 | C | 183 | cWW | cWW |
17 | IL_4V5O_109 | 4V5O | 0.4884 | 1 | BA | SSU rRNA | G | 580 | C | 581 | * | G | 550 | C | 552 | cWW | cWW | |
18 | IL_2PJP_001 | 2PJP | 0.3753 | 1 | Single bulged U | B | SECIS RNA | A | 29 | C | 30 | * | G | 16 | U | 18 | cWW | cWW |
19 | IL_5TBW_012 | 5TBW | 0.3496 | 1 | Single bulged U | 1 | LSU rRNA | A | 204 | C | 205 | * | G | 189 | U | 191 | cWW | cWW |
20 | IL_4V8P_168 | 4V8P | 0.3336 | 1 | Single bulged U (H) | D1 | LSU rRNA | A | 204 | C | 205 | * | G | 189 | U | 191 | cWW | cWW |
21 | IL_4V9F_013 | 4V9F | 0.3126 | 1 | Single bulged U | 0 | LSU rRNA | G | 322 | C | 323 | * | G | 307 | C | 309 | cWW | cWW |
22 | IL_4V88_414 | 4V88 | 0.3930 | 1 | Single bulged U | A6 | SSU rRNA | G | 586 | C | 587 | * | G | 557 | C | 559 | cWW | cWW |
23 | IL_5TBW_146 | 5TBW | 0.4363 | 1 | Single bulged U | 4 | 5.8S rRNA | G | 68 | U | 69 | * | A | 89 | C | 91 | cWW | cWW |
24 | IL_4WF9_038 | 4WF9 | 0.3225 | 1 | Single bulged U | X | LSU rRNA | A | 1055 | A | 1057 | * | U | 1193 | U | 1194 | cWW | cWW |
25 | IL_2OIU_003 | 2OIU | 0.3898 | 1 | Single bulged U | Q | L1 Ribozyme RNA Ligase | A | 41 | C | 42 | * | G | 18 | U | 20 | cWW | cWW |
26 | IL_4V8P_149 | 4V8P | 0.4417 | 1 | Single bulged U (H) | C2 | 5.8S rRNA | G | 71 | C | 72 | * | G | 90 | C | 92 | cWW | cWW |
27 | IL_5J7L_279 | 5J7L | 0.5201 | 1 | Single bulged U | DA | LSU rRNA | G | 1011 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW |
28 | IL_4Y4O_215 | 4Y4O | 0.5063 | 1 | Single bulged U | 2A | LSU rRNA | G | 1011 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW |
29 | IL_5J7L_298 | 5J7L | 0.5662 | 1 | Single bulged U | DA | LSU rRNA | G | 1459 | C | 1461 | * | G | 1450 | C | 1451 | cWW | cWW |
30 | IL_4C7O_001 | 4C7O | 0.5404 | 1 | Single bulged U | E | SRP RNA | G | 38 | A | 40 | * | U | 7 | C | 8 | cWW | cWW |
31 | IL_4V8P_258 | 4V8P | 0.4243 | 1 | D1 | LSU rRNA | A | 2557 | U | 2558 | * | A | 2561 | U | 2563 | cWW | cWW | |
32 | IL_4IOA_071 | 4IOA | 0.2890 | 2 | X | LSU rRNA | G | 1916 | C | 1917 | * | G | 1947 | C | 1950 | cWW | cWW | |
33 | IL_5J7L_318 | 5J7L | 0.3306 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
34 | IL_5TBW_089 | 5TBW | 0.4413 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2276 | C | 2277 | * | G | 2307 | U | 2310 | cWW | cWW |
35 | IL_5TBW_130 | 5TBW | 0.4334 | 1 | Single bulged U | 1 | LSU rRNA | G | 3318 | A | 3320 | * | U | 3387 | C | 3388 | ncWW | cWW |
36 | IL_4V88_401 | 4V88 | 0.4588 | 1 | Single bulged U | A6 | SSU rRNA | G | 279 | G | 281 | * | C | 275 | C | 276 | cWW | cWW |
37 | IL_5TBW_050 | 5TBW | 0.3889 | 1 | Single bulged U | 1 | LSU rRNA | A | 1180 | A | 1182 | * | U | 1324 | U | 1325 | cWW | cWW |
38 | IL_5TBW_125 | 5TBW | 0.4391 | 1 | Single bulged U | 1 | LSU rRNA | G | 3197 | G | 3199 | * | C | 3193 | C | 3194 | cWW | cWW |
39 | IL_1S03_001 | 1S03 | 0.3752 | 1 | Single bulged U | A | 47-MER | A | 6 | G | 8 | * | C | 41 | U | 42 | cWW | cWW |
40 | IL_4V8P_281 | 4V8P | 0.3957 | 1 | D1 | LSU rRNA | G | 3144 | G | 3146 | * | U | 3247 | C | 3248 | cWW | cWW | |
41 | IL_4LFB_046 | 4LFB | 0.2842 | 1 | Single bulged U | A | SSU rRNA | C | 1195 | G | 1197 | * | C | 1060 | G | 1061 | cWW | cWW |
42 | IL_4V8P_196 | 4V8P | 0.2357 | 1 | Single bulged U (H) | D1 | LSU rRNA | C | 898 | G | 900 | * | C | 911 | G | 912 | cWW | cWW |
43 | IL_5TBW_032 | 5TBW | 0.2280 | 1 | Single bulged U | 1 | LSU rRNA | C | 873 | G | 875 | * | C | 886 | G | 887 | cWW | cWW |
44 | IL_3NDB_005 | 3NDB | 0.2568 | 1 | Single bulged U | M | SRP RNA | G | 237 | G | 238 | * | C | 139 | C | 141 | cWW | cWW |
45 | IL_4V9F_074 | 4V9F | 0.2283 | 1 | Single bulged U | 0 | LSU rRNA | A | 2108 | G | 2110 | * | C | 2477 | U | 2478 | cWW | cWW |
46 | IL_4WF9_080 | 4WF9 | 0.1979 | 1 | Single bulged U | X | LSU rRNA | G | 2094 | G | 2096 | * | C | 2469 | C | 2470 | cWW | cWW |
47 | IL_4IOA_075 | 4IOA | 0.2164 | 1 | Single bulged U | X | LSU rRNA | G | 2050 | G | 2052 | * | C | 2421 | C | 2422 | cWW | cWW |
48 | IL_4Y4O_253 | 4Y4O | 0.1415 | 1 | Single bulged U | 2A | LSU rRNA | G | 2067 | G | 2069 | * | C | 2442 | C | 2443 | cWW | cWW |
49 | IL_4FRG_002 | 4FRG | 0.2192 | 1 | Single bulged U | B | cobalamin riboswitch aptamer domain | G | 23 | G | 25 | * | C | 39 | C | 40 | cWW | cWW |
50 | IL_1S03_005 | 1S03 | 0.1881 | 1 | Single bulged U | B | 47-MER | A | 6 | G | 8 | * | C | 41 | U | 42 | cWW | cWW |
51 | IL_397D_001 | 397D | 0.1977 | 3 | Multiple bulged bases | A+B | RNA (15-mer) + RNA (12-mer) | A | 22 | G | 26 | * | C | 39 | U | 40 | cWW | cWW |
52 | IL_4V9F_039 | 4V9F | 0.2124 | 1 | Single bulged U | 0 | LSU rRNA | G | 1108 | G | 1110 | * | C | 1253 | C | 1254 | cWW | cWW |
53 | IL_4V5O_102 | 4V5O | 0.1431 | 1 | BA | SSU rRNA | C | 455 | A | 456 | * | U | 431 | G | 433 | cWW | cWW | |
54 | IL_4V88_407 | 4V88 | 0.0000 | 1 | Single bulged U | A6 | SSU rRNA | U | 463 | A | 464 | * | U | 439 | A | 441 | cWW | cWW |
55 | IL_5J7L_017 | 5J7L | 0.2053 | 1 | Single bulged U | AA | SSU rRNA | C | 392 | A | 393 | * | U | 367 | G | 369 | cWW | cWW |
56 | IL_4V88_439 | 4V88 | 0.2083 | 1 | Single bulged U | A6 | SSU rRNA | C | 1066 | C | 1067 | * | G | 1051 | G | 1053 | cWW | cWW |
57 | IL_4V5O_095 | 4V5O | 0.2036 | 1 | BA | SSU rRNA | C | 192 | C | 193 | * | G | 181 | G | 183 | cWW | cWW | |
58 | IL_5TBW_134 | 5TBW | 0.1534 | 1 | Single bulged U | 1 | LSU rRNA | U | 3363 | C | 3364 | * | G | 3340 | A | 3342 | cWW | cWW |
59 | IL_3WBM_001 | 3WBM | 0.2037 | 1 | Single bulged U | Y+X | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | A | 4 | cWW | cWW |
60 | IL_3D2V_001 | 3D2V | 0.1831 | 1 | Single bulged U | A | TPP riboswitch (THI element) | C | 5 | C | 6 | * | G | 73 | G | 75 | cWW | cWW |
61 | IL_2PN3_003 | 2PN3 | 0.1811 | 1 | Single bulged U | A+B | RNA (24-mer) + RNA (20-mer) | U | 61 | C | 62 | * | G | 105 | G | 107 | cWW | cWW |
62 | IL_4V9F_107 | 4V9F | 0.1319 | 1 | Single bulged U | 9 | 5S rRNA | C | 95 | C | 96 | * | G | 86 | G | 88 | cWW | cWW |
63 | IL_4LFB_042 | 4LFB | 0.1250 | 1 | Single bulged U | A | SSU rRNA | C | 1208 | C | 1209 | * | G | 1048 | G | 1050 | cWW | cWW |
64 | IL_4V88_449 | 4V88 | 0.1616 | 1 | Single bulged U | A6 | SSU rRNA | C | 1440 | C | 1441 | * | G | 1268 | G | 1270 | cWW | cWW |
65 | IL_4V5O_142 | 4V5O | 0.1502 | 1 | Single bulged U (H) | BA | SSU rRNA | C | 1411 | C | 1412 | * | G | 1240 | G | 1242 | cWW | cWW |
66 | IL_5J7L_046 | 5J7L | 0.1857 | 1 | Single bulged U | AA | SSU rRNA | C | 1208 | C | 1209 | * | G | 1048 | G | 1050 | cWW | cWW |
67 | IL_3W3S_005 | 3W3S | 0.1922 | 1 | Single bulged U | B | Selenocysteine transfer RNA | C | 26||||43_455 | C | 27||||43_455 | * | G | 43||||43_455 | G | 44||||43_455 | cWW | cWW |
68 | IL_3W3S_002 | 3W3S | 0.1922 | 1 | Single bulged U | B | Selenocysteine transfer RNA | C | 26 | C | 27 | * | G | 43 | G | 44 | cWW | cWW |
69 | IL_2A64_003 | 2A64 | 0.1802 | 1 | Single bulged U | A | ribonuclease P RNA | C | 77 | C | 78 | * | G | 66 | G | 68 | cWW | cWW |
70 | IL_3DHS_003 | 3DHS | 0.2361 | 1 | A | RNase P RNA | C | 77 | C | 78 | * | G | 66 | G | 68 | cWW | cWW | |
71 | IL_4V8P_289 | 4V8P | 0.1884 | 1 | D1 | LSU rRNA | C | 3320 | U | 3321 | * | A | 3297 | G | 3299 | cWW | cWW | |
72 | IL_5TBW_053 | 5TBW | 0.2201 | 1 | Single bulged U | 1 | LSU rRNA | C | 1296 | C | 1297 | * | G | 1207 | G | 1209 | cWW | cWW |
73 | IL_4V8P_217 | 4V8P | 0.1880 | 1 | Single bulged U (H) | D1 | LSU rRNA | C | 1323 | C | 1324 | * | G | 1234 | G | 1236 | cWW | cWW |
74 | IL_2ZY6_002 | 2ZY6 | 0.2036 | 1 | Single bulged U | A | phenylalanyl transfer RNA | C | 24 | C | 25 | * | G | 10 | G | 12 | cWW | cWW |
75 | IL_3MEI_001 | 3MEI | 0.2244 | 1 | Single bulged U | A+B | RNA (23-mer) | C | 7 | G | 8 | * | C | 15 | G | 17 | cWW | cWW |
76 | IL_4V8P_150 | 4V8P | 0.2656 | 1 | D1+C2 | LSU rRNA | C | 6 | C | 7 | * | G | 147 | G | 149 | cWW | cWW | |
77 | IL_2UWM_003 | 2UWM | 0.2414 | 1 | Single bulged U | D | RNA (23-mer) | C | 25 | G | 27 | * | C | 21 | G | 22 | cWW | cWW |
78 | IL_3DHS_002 | 3DHS | 0.2633 | 1 | A | RNase P RNA | G | 395 | C | 396 | * | G | 51 | C | 53 | cWW | cWW | |
79 | IL_5TBW_025 | 5TBW | 0.2406 | 1 | Single bulged U | 1 | LSU rRNA | A | 755 | U | 756 | * | A | 775 | U | 777 | cWW | cWW |
80 | IL_4V5O_150 | 4V5O | 0.3180 | 1 | BA | SSU rRNA | U | 1322 | C | 1323 | * | G | 1343 | A | 1345 | cWW | cWW | |
81 | IL_5TBW_003 | 5TBW | 0.2922 | 1 | Single bulged U | 1+4 | LSU rRNA + 5.8S rRNA | A | 13 | C | 15 | * | G | 144 | U | 145 | cWW | cWW |
82 | IL_4IOA_034 | 4IOA | 0.2602 | 1 | Single bulged U | X | LSU rRNA | A | 1022 | G | 1024 | * | C | 1160 | U | 1161 | cWW | cWW |
83 | IL_4LFB_014 | 4LFB | 0.1742 | 1 | Single bulged U | A | SSU rRNA | G | 392 | A | 393 | * | U | 367 | C | 369 | cWW | cWW |
84 | IL_4V8P_253 | 4V8P | 0.2488 | 1 | Single bulged U (H) | D1 | LSU rRNA | G | 2404 | U | 2406 | * | A | 2799 | C | 2800 | cWW | cWW |
85 | IL_5TBW_093 | 5TBW | 0.2417 | 1 | Single bulged U | 1 | LSU rRNA | G | 2409 | U | 2411 | * | A | 2811 | C | 2812 | cWW | cWW |
86 | IL_4V9F_029 | 4V9F | 0.2450 | 1 | Single bulged U | 0 | LSU rRNA | G | 834 | G | 836 | * | C | 847 | C | 848 | cWW | cWW |
87 | IL_4V8P_214 | 4V8P | 0.2808 | 1 | Single bulged U (H) | D1 | LSU rRNA | A | 1207 | G | 1209 | * | U | 1351 | U | 1352 | cWW | cWW |
88 | IL_3TZR_002 | 3TZR | 0.2716 | 1 | Single bulged U | B+A | RNA (16-mer) | G | 105 | G | 107 | * | U | 61 | C | 62 | cWW | cWW |
89 | IL_4V8P_163 | 4V8P | 0.3937 | 1 | D1 | LSU rRNA | G | 158 | G | 159 | * | U | 260 | C | 262 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CC*GUG | 17 |
GUG*CC | 8 |
GC*GUC | 7 |
CG*CUG | 5 |
AC*GUU | 5 |
AUG*CU | 4 |
CUG*CG | 4 |
GG*UUC | 3 |
GG*CUC | 3 |
AU*AUU | 3 |
GUC*GC | 3 |
UC*GUA | 3 |
AUA*UU | 2 |
GUA*UC | 2 |
GC*GCAC | 2 |
GUG*UC | 2 |
CA*UUG | 2 |
GUU*AC | 2 |
AG*CUU | 1 |
CG*UUG | 1 |
CC*GAAG | 1 |
GU*AUC | 1 |
GC*GCAU | 1 |
AUCUG*CU | 1 |
UA*UUA | 1 |
UC*GUG | 1 |
CU*AUG | 1 |
AUC*GU | 1 |
GA*UUC | 1 |
AUG*UU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*U | 55 |
U* | 29 |
*CA | 3 |
*AA | 1 |
UCU* | 1 |
Release history
Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
---|---|---|---|---|---|---|---|---|---|
Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged U (61)
- (14)
- Single bulged U (H) (7)
- Major groove intercalation (3)
- Multiple bulged bases (2)
- Bulged stacked bases (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.95
Coloring options: