IL_83039.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3
1	IL_4V8P_263	4V8P	0.3304	1		D1	LSU rRNA	A	2774	G	2775	*	C	2760	U	2762	cWW	cWW
2	IL_4KZD_001	4KZD	0.2389	1	Single bulged U	R	RNA (84-MER)	C	10	G	11	*	C	74	G	76	cWW	cWW
3	IL_4V8P_246	4V8P	0.2901	1		D1	LSU rRNA	C	2232	G	2233	*	C	2199	G	2201	cWW	cWW
4	IL_5TBW_086	5TBW	0.3281	1	Single bulged U	1	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206	cWW	cWW
5	IL_4WF9_088	4WF9	0.2939	1	Single bulged U	X	LSU rRNA	G	2441	G	2442	*	U	2428	C	2430	cWW	cWW
6	IL_5J7L_334	5J7L	0.3623	1	Single bulged U	DA	LSU rRNA	G	2414	G	2415	*	U	2401	C	2403	cWW	cWW
7	IL_5LYS_008	5LYS	0.4253	1	Single bulged U	B	7SK RNA	C	45	G	46	*	C	62	G	64	cWW	cWW
8	IL_5TBW_131	5TBW	0.5596	1	Single bulged U	1	LSU rRNA	C	3324	G	3325	*	U	3381	G	3383	cWW	cWW
9	IL_3IWN_003	3IWN	0.5141	1	Major groove intercalation	A	Cyclic di-GMP-I riboswitch	G	81	G	82	*	C	42	C	44	cWW	cWW
10	IL_3MXH_003	3MXH	0.4611	1	Major groove intercalation	R	Cyclic di-GMP-I riboswitch	G	86	G	87	*	C	52	C	54	cWW	cWW
11	IL_1MJI_003	1MJI	0.3703	2	Multiple bulged bases	D	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
12	IL_1ET4_002	1ET4	0.3376	1	Major groove intercalation	A	RNA APTAMER, 35-MER	C	218	C	219	*	G	226	G	228	cWW	cWW
13	IL_2R8S_004	2R8S	0.3505	1	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
14	IL_2A64_002	2A64	0.4268	1	Single bulged U	A	RNase P class B	G	395	C	396	*	G	51	C	53	cWW	cWW
15	IL_4WF9_030	4WF9	0.4698	1	Single bulged U	X	LSU rRNA	A	897	U	898	*	A	969	U	971	cWW	cWW
16	IL_4O26_001	4O26	0.4718	1	Single bulged U	E	Telomerase TR	G	193	C	194	*	G	181	C	183	cWW	cWW
17	IL_4V5O_109	4V5O	0.4884	1		BA	SSU rRNA	G	580	C	581	*	G	550	C	552	cWW	cWW
18	IL_2PJP_001	2PJP	0.3753	1	Single bulged U	B	SECIS RNA	A	29	C	30	*	G	16	U	18	cWW	cWW
19	IL_5TBW_012	5TBW	0.3496	1	Single bulged U	1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
20	IL_4V8P_168	4V8P	0.3336	1	Single bulged U (H)	D1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
21	IL_4V9F_013	4V9F	0.3126	1	Single bulged U	0	LSU rRNA	G	322	C	323	*	G	307	C	309	cWW	cWW
22	IL_4V88_414	4V88	0.3930	1	Single bulged U	A6	SSU rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
23	IL_5TBW_146	5TBW	0.4363	1	Single bulged U	4	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
24	IL_4WF9_038	4WF9	0.3225	1	Single bulged U	X	LSU rRNA	A	1055	A	1057	*	U	1193	U	1194	cWW	cWW
25	IL_2OIU_003	2OIU	0.3898	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
26	IL_4V8P_149	4V8P	0.4417	1	Single bulged U (H)	C2	5.8S rRNA	G	71	C	72	*	G	90	C	92	cWW	cWW
27	IL_5J7L_279	5J7L	0.5201	1	Single bulged U	DA	LSU rRNA	G	1011	C	1013	*	G	1149	C	1150	cWW	cWW
28	IL_4Y4O_215	4Y4O	0.5063	1	Single bulged U	2A	LSU rRNA	G	1011	C	1013	*	G	1149	C	1150	cWW	cWW
29	IL_5J7L_298	5J7L	0.5662	1	Single bulged U	DA	LSU rRNA	G	1459	C	1461	*	G	1450	C	1451	cWW	cWW
30	IL_4C7O_001	4C7O	0.5404	1	Single bulged U	E	SRP RNA	G	38	A	40	*	U	7	C	8	cWW	cWW
31	IL_4V8P_258	4V8P	0.4243	1		D1	LSU rRNA	A	2557	U	2558	*	A	2561	U	2563	cWW	cWW
32	IL_4IOA_071	4IOA	0.2890	2		X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
33	IL_5J7L_318	5J7L	0.3306	2	Bulged stacked bases	DA	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
34	IL_5TBW_089	5TBW	0.4413	2	Bulged stacked bases	1	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
35	IL_5TBW_130	5TBW	0.4334	1	Single bulged U	1	LSU rRNA	G	3318	A	3320	*	U	3387	C	3388	ncWW	cWW
36	IL_4V88_401	4V88	0.4588	1	Single bulged U	A6	SSU rRNA	G	279	G	281	*	C	275	C	276	cWW	cWW
37	IL_5TBW_050	5TBW	0.3889	1	Single bulged U	1	LSU rRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
38	IL_5TBW_125	5TBW	0.4391	1	Single bulged U	1	LSU rRNA	G	3197	G	3199	*	C	3193	C	3194	cWW	cWW
39	IL_1S03_001	1S03	0.3752	1	Single bulged U	A	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
40	IL_4V8P_281	4V8P	0.3957	1		D1	LSU rRNA	G	3144	G	3146	*	U	3247	C	3248	cWW	cWW
41	IL_4LFB_046	4LFB	0.2842	1	Single bulged U	A	SSU rRNA	C	1195	G	1197	*	C	1060	G	1061	cWW	cWW
42	IL_4V8P_196	4V8P	0.2357	1	Single bulged U (H)	D1	LSU rRNA	C	898	G	900	*	C	911	G	912	cWW	cWW
43	IL_5TBW_032	5TBW	0.2280	1	Single bulged U	1	LSU rRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
44	IL_3NDB_005	3NDB	0.2568	1	Single bulged U	M	SRP RNA	G	237	G	238	*	C	139	C	141	cWW	cWW
45	IL_4V9F_074	4V9F	0.2283	1	Single bulged U	0	LSU rRNA	A	2108	G	2110	*	C	2477	U	2478	cWW	cWW
46	IL_4WF9_080	4WF9	0.1979	1	Single bulged U	X	LSU rRNA	G	2094	G	2096	*	C	2469	C	2470	cWW	cWW
47	IL_4IOA_075	4IOA	0.2164	1	Single bulged U	X	LSU rRNA	G	2050	G	2052	*	C	2421	C	2422	cWW	cWW
48	IL_4Y4O_253	4Y4O	0.1415	1	Single bulged U	2A	LSU rRNA	G	2067	G	2069	*	C	2442	C	2443	cWW	cWW
49	IL_4FRG_002	4FRG	0.2192	1	Single bulged U	B	Cobalamin riboswitch	G	23	G	25	*	C	39	C	40	cWW	cWW
50	IL_1S03_005	1S03	0.1881	1	Single bulged U	B	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
51	IL_397D_001	397D	0.1977	3	Multiple bulged bases	A+B	RNA (15-mer) + RNA (12-mer)	A	22	G	26	*	C	39	U	40	cWW	cWW
52	IL_4V9F_039	4V9F	0.2124	1	Single bulged U	0	LSU rRNA	G	1108	G	1110	*	C	1253	C	1254	cWW	cWW
53	IL_4V5O_102	4V5O	0.1431	1		BA	SSU rRNA	C	455	A	456	*	U	431	G	433	cWW	cWW
54	IL_4V88_407	4V88	0.0000	1	Single bulged U	A6	SSU rRNA	U	463	A	464	*	U	439	A	441	cWW	cWW
55	IL_5J7L_017	5J7L	0.2053	1	Single bulged U	AA	SSU rRNA	C	392	A	393	*	U	367	G	369	cWW	cWW
56	IL_4V88_439	4V88	0.2083	1	Single bulged U	A6	SSU rRNA	C	1066	C	1067	*	G	1051	G	1053	cWW	cWW
57	IL_4V5O_095	4V5O	0.2036	1		BA	SSU rRNA	C	192	C	193	*	G	181	G	183	cWW	cWW
58	IL_5TBW_134	5TBW	0.1534	1	Single bulged U	1	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
59	IL_3WBM_001	3WBM	0.2037	1	Single bulged U	Y+X	RNA (25-MER)	U	23	C	24	*	G	2	A	4	cWW	cWW
60	IL_3D2V_001	3D2V	0.1831	1	Single bulged U	A	TPP riboswitch (THI element)	C	5	C	6	*	G	73	G	75	cWW	cWW
61	IL_2PN3_003	2PN3	0.1811	1	Single bulged U	A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
62	IL_4V9F_107	4V9F	0.1319	1	Single bulged U	9	5S rRNA	C	95	C	96	*	G	86	G	88	cWW	cWW
63	IL_4LFB_042	4LFB	0.1250	1	Single bulged U	A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
64	IL_4V88_449	4V88	0.1616	1	Single bulged U	A6	SSU rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
65	IL_4V5O_142	4V5O	0.1502	1	Single bulged U (H)	BA	SSU rRNA	C	1411	C	1412	*	G	1240	G	1242	cWW	cWW
66	IL_5J7L_046	5J7L	0.1857	1	Single bulged U	AA	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
67	IL_3W3S_005	3W3S	0.1922	1	Single bulged U	B	Selenocysteine transfer RNA	C	26\|\|\|\|43_455	C	27\|\|\|\|43_455	*	G	43\|\|\|\|43_455	G	44\|\|\|\|43_455	cWW	cWW
68	IL_3W3S_002	3W3S	0.1922	1	Single bulged U	B	Selenocysteine transfer RNA	C	26	C	27	*	G	43	G	44	cWW	cWW
69	IL_2A64_003	2A64	0.1802	1	Single bulged U	A	RNase P class B	C	77	C	78	*	G	66	G	68	cWW	cWW
70	IL_3DHS_003	3DHS	0.2361	1		A	RNase P class B	C	77	C	78	*	G	66	G	68	cWW	cWW
71	IL_4V8P_289	4V8P	0.1884	1		D1	LSU rRNA	C	3320	U	3321	*	A	3297	G	3299	cWW	cWW
72	IL_5TBW_053	5TBW	0.2201	1	Single bulged U	1	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
73	IL_4V8P_217	4V8P	0.1880	1	Single bulged U (H)	D1	LSU rRNA	C	1323	C	1324	*	G	1234	G	1236	cWW	cWW
74	IL_2ZY6_002	2ZY6	0.2036	1	Single bulged U	A	phenylalanyl transfer RNA	C	24	C	25	*	G	10	G	12	cWW	cWW
75	IL_3MEI_001	3MEI	0.2244	1	Single bulged U	A+B	RNA (23-mer)	C	7	G	8	*	C	15	G	17	cWW	cWW
76	IL_4V8P_150	4V8P	0.2656	1		D1+C2	LSU rRNA	C	6	C	7	*	G	147	G	149	cWW	cWW
77	IL_2UWM_003	2UWM	0.2414	1	Single bulged U	D	RNA (23-mer)	C	25	G	27	*	C	21	G	22	cWW	cWW
78	IL_3DHS_002	3DHS	0.2633	1		A	RNase P class B	G	395	C	396	*	G	51	C	53	cWW	cWW
79	IL_5TBW_025	5TBW	0.2406	1	Single bulged U	1	LSU rRNA	A	755	U	756	*	A	775	U	777	cWW	cWW
80	IL_4V5O_150	4V5O	0.3180	1		BA	SSU rRNA	U	1322	C	1323	*	G	1343	A	1345	cWW	cWW
81	IL_5TBW_003	5TBW	0.2922	1	Single bulged U	1+4	LSU rRNA + 5.8S rRNA	A	13	C	15	*	G	144	U	145	cWW	cWW
82	IL_4IOA_034	4IOA	0.2602	1	Single bulged U	X	LSU rRNA	A	1022	G	1024	*	C	1160	U	1161	cWW	cWW
83	IL_4LFB_014	4LFB	0.1742	1	Single bulged U	A	SSU rRNA	G	392	A	393	*	U	367	C	369	cWW	cWW
84	IL_4V8P_253	4V8P	0.2488	1	Single bulged U (H)	D1	LSU rRNA	G	2404	U	2406	*	A	2799	C	2800	cWW	cWW
85	IL_5TBW_093	5TBW	0.2417	1	Single bulged U	1	LSU rRNA	G	2409	U	2411	*	A	2811	C	2812	cWW	cWW
86	IL_4V9F_029	4V9F	0.2450	1	Single bulged U	0	LSU rRNA	G	834	G	836	*	C	847	C	848	cWW	cWW
87	IL_4V8P_214	4V8P	0.2808	1	Single bulged U (H)	D1	LSU rRNA	A	1207	G	1209	*	U	1351	U	1352	cWW	cWW
88	IL_3TZR_002	3TZR	0.2716	1	Single bulged U	B+A	RNA (16-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
89	IL_4V8P_163	4V8P	0.3937	1		D1	LSU rRNA	G	158	G	159	*	U	260	C	262	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GUG	17
GUG*CC	8
GC*GUC	7
CG*CUG	5
AC*GUU	5
AUG*CU	4
CUG*CG	4
GG*UUC	3
GG*CUC	3
AU*AUU	3
GUC*GC	3
UC*GUA	3
AUA*UU	2
GUA*UC	2
GC*GCAC	2
GUG*UC	2
CA*UUG	2
GUU*AC	2
AG*CUU	1
CG*UUG	1
CC*GAAG	1
GU*AUC	1
GC*GCAU	1
AUCUG*CU	1
UA*UUA	1
UC*GUG	1
CU*AUG	1
AUC*GU	1
GA*UUC	1
AUG*UU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*U	55
U*	29
*CA	3
*AA	1
UCU*	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_83039.1 Version IL_83039.1 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_83039.1 Version IL_83039.1 of this group appears in releases 3.3 to 3.11

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Csv

Json