Motif IL_84473.1 Version IL_84473.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_103 | 5TBW | 0.3528 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW | |
| 2 | IL_4R4V_006 | 4R4V | 0.2575 | 2 | Isolated non-canonical cWW pair | A | VS ribozyme RNA | G | 724 | A | 725 | C | 726 | * | G | 749 | G | 752 | C | 753 | cWW | cWW | cWW | |
| 3 | IL_4R4V_012 | 4R4V | 0.2575 | 2 | A | VS ribozyme RNA | G | 724||||7_556 | A | 725||||7_556 | C | 726||||7_556 | * | G | 749||||7_556 | G | 752||||7_556 | C | 753||||7_556 | cWW | cWW | cWW | ||
| 4 | IL_5D0B_001 | 5D0B | 0.2506 | 0 | Isolated non-canonical cWW pair | F | RNA (17-mer) | A | 37 | A | 38 | U | 39 | * | A | 31 | C | 32 | U | 33 | cWW | cWW | cWW | |
| 5 | IL_3IVK_002 | 3IVK | 0.1347 | 0 | Isolated non-canonical cWW pair | M | class I ligase product | A | 102 | A | 103 | C | 104 | * | G | 87 | G | 88 | U | 89 | cWW | cWW | cWW | ncWW |
| 6 | IL_4V88_472 | 4V88 | 0.1046 | 0 | Isolated non-canonical cWW pair | A6 | SSU rRNA | G | 1727 | A | 1728 | C | 1729 | * | G | 1672 | G | 1673 | C | 1674 | cWW | cWW | cWW | |
| 7 | IL_4LFB_063 | 4LFB | 0.0000 | 0 | Isolated non-canonical cWW pair | A | SSU rRNA | G | 1464 | C | 1465 | C | 1466 | * | G | 1435 | U | 1436 | C | 1437 | cWW | cWW | cWW | |
| 8 | IL_5TBW_046 | 5TBW | 0.0976 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | A | 1136 | C | 1137 | U | 1138 | * | A | 1120 | U | 1121 | U | 1122 | cWW | cWW | cWW | |
| 9 | IL_3MOJ_002 | 3MOJ | 0.3888 | 0 | A | LSU rRNA | G | 2569 | G | 2570 | U | 2571 | * | A | 2513 | U | 2514 | C | 2515 | cWW | ncWWa | ncWW | ||
| 10 | IL_4V88_448 | 4V88 | 0.4013 | 0 | A6 | SSU rRNA | U | 1249 | U | 1250 | U | 1251 | * | A | 1234 | C | 1235 | A | 1236 | cWW | cWW | |||
| 11 | IL_4M4O_004 | 4M4O | 0.9129 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAC*GCAGC | 2 |
| GAU*GCU | 1 |
| AAU*ACU | 1 |
| AAC*GGU | 1 |
| GAC*GGC | 1 |
| GCC*GUC | 1 |
| ACU*AUU | 1 |
| GGU*AUC | 1 |
| UUU*ACA | 1 |
| GAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 2 |
| A*CAG | 2 |
| A*G | 2 |
| C*U | 2 |
| G*U | 1 |
| U*C | 1 |
| A*A | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (7)
- (4)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.40 | Max 1.08
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