Motif IL_86929.1 Version IL_86929.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_018 | 7A0S | 0.6609 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | ntHS | tHS | ncWW | cWW |
| 2 | IL_4N0T_001 | 4N0T | 0.0000 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | * | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAC*GCGGAG | 1 |
| AGAGAC*GUCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA*CGGA | 1 |
| GAGA*UCAA | 1 |
- Annotations
-
- Double sheared; A in syn; two near cWW pairs (1)
- Triple sheared with non-canonical cWW (1)
- Basepair signature
- cWW-cWW-tSH-tSH-L-R-cWW
- Heat map statistics
- Min 0.66 | Avg 0.33 | Max 0.66
Coloring options: