Motif IL_86932.1 Version IL_86932.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4WF9_123 | 4WF9 | 0.6083 | 0 | X | LSU rRNA | C | 1768 | C | 1769 | C | 1770 | A | 1771 | G | 1772 | * | U | 1757 | A | 1758 | G | 1759 | G | 1760 | G | 1761 | cWW | ncWW | |||
2 | IL_7VYX_004 | 7VYX | 0.0000 | 0 | C | sgRNA | G | 21 | G | 22 | A | 23 | U | 24 | G | 25 | * | U | 37 | U | 38 | A | 39 | U | 40 | C | 41 | cWW | ncWWa | ncWw | ncWw | ncWW |
3 | IL_6CZR_167 | 6CZR | 0.4076 | 1 | 1a | SSU rRNA | G | 1388 | U | 1389 | 5MC | 1390 | A | 1391 | C | 1392 | * | G | 1469 | A | 1470 | G | 1472 | U | 1473 | C | 1474 | ncWW | ncWW | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCCAG*UAGGG | 1 |
GGAUG*UUAUC | 1 |
GU(5MC)AC*GAAGUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCA*AGG | 1 |
GAU*UAU | 1 |
U(5MC)A*AAGU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-R-cWW-cWW
- Heat map statistics
- Min 0.41 | Avg 0.38 | Max 0.70
Coloring options: