Motif IL_87173.1 Version IL_87173.1 of this group appears in releases 0.6 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_009 | 1U6B | 0.0000 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW |
| 2 | IL_2AW7_039 | 2AW7 | 0.6549 | 1 | A | SSU rRNA | G | 774 | G | 775 | G | 776 | G | 778 | * | U | 804 | C | 805 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 1 |
| GGGAG*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 1 |
| GGA* | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_87173.1 | Only in the parent motif |
|---|---|---|---|
| IL_75000.1 Compare | IL_2AW7_039 | IL_1U6B_009 | IL_1FJG_032 |
| IL_40672.1 Compare | IL_1U6B_009 | IL_2AW7_039 |
Children motifs
| Child motif | Common motif instances | Only in IL_87173.1 | Only in the child motif |
|---|---|---|---|
| IL_11751.1 Compare | IL_2AW7_039 | IL_1U6B_009 | IL_1FJG_032 |
| IL_36254.1 Compare | IL_1U6B_009 | IL_2AW7_039 | IL_4FNJ_003, IL_3U5H_132 |
- Annotations
-
- Major groove platform with intercalated tWH (1)
- (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.65 | Avg 0.33 | Max 0.65
Coloring options: