Motif IL_87548.1 Version IL_87548.1 of this group appears in releases 0.7 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-7 | 5-6 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_018 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 446 | G | 447 | A | 448 | C | 449 | G | 450 | * | C | 483 | G | 484 | G | 485 | U | 486 | A | 487 | C | 488 | cWW | tSH | tHW | cWW | cSH | ||
| 2 | IL_2QBG_067 | 2QBG | 0.4501 | 1 | B | 23S rRNA | U | 1742 | G | 1743 | A | 1744 | A | 1745 | A | 1746 | * | U | 1712 | A | 1713 | G | 1715 | U | 1716 | A | 1717 | G | 1718 | cWW | tSH | tHW | tWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACG*CGGUAC | 1 |
| UGAAA*UAUGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAC*GGUA | 1 |
| GAA*AUGUA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87548.1 | Only in the parent motif |
|---|---|---|---|
| IL_62718.1 Compare | IL_1FJG_018 | IL_2QBG_067 | IL_3G78_013 |
| IL_39230.1 Compare | IL_2QBG_067 | IL_1FJG_018 |
Children motifs
| Child motif | Common motif instances | Only in IL_87548.1 | Only in the child motif |
|---|---|---|---|
| IL_87548.2 Compare | IL_2QBG_067, IL_1FJG_018 | IL_4W21_049 |
- Annotations
- Basepair signature
- cWW-tSH-tHW-L-cSH-R-cWW
- Heat map statistics
- Min 0.45 | Avg 0.23 | Max 0.45
Coloring options: