Motif IL_87744.1 Version IL_87744.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_047 | 1FJG | 0.9181 | 0 | Minor groove platform (H) | A | SSU rRNA | C | 1128 | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | ncSH | cWW | ncWS | cWW | ||
| 2 | IL_3F1H_028 | 3F1H | 0.0000 | 2 | A | 23S RRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | tSW | cWW | tWH | ncWS | cWW | ||
| 3 | IL_2ZJR_028 | 2ZJR | 0.1597 | 2 | C-loop with bulged stacked A's (H) | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 2 |
| CCAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAC*AA | 2 |
| CAG* | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_87744.1 | Only in the child motif |
|---|---|---|---|
| IL_87744.2 Compare | IL_2ZJR_028, IL_3F1H_028 | IL_1FJG_047 | IL_1FJG_032 |
| IL_47950.2 Compare | IL_1FJG_047 | IL_2ZJR_028, IL_3F1H_028 | IL_2ZJR_047, IL_1S72_051, IL_1S72_091, IL_1FJG_015, IL_3F1H_101, IL_2ZJR_096, IL_3F1H_049, IL_1FJG_013 |
- Annotations
-
- Minor groove platform (H) (1)
- C-loop with bulged stacked A's (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.16 | Avg 0.44 | Max 0.92
Coloring options: